Wall clock time and date at job start Mon Mar 30 2020 03:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86801 * 120.00058 * 2 1 4 4 H 1.48495 * 109.47147 * 239.99582 * 3 2 1 5 5 H 1.48498 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46818 * 120.00025 * 3 2 1 7 7 C 1.38824 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99784 * 180.02562 * 7 2 1 9 9 N 1.36903 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.38874 * 119.99891 * 179.97438 * 9 7 2 11 11 C 1.39581 * 120.16402 * 0.02562 * 10 9 7 12 12 C 1.38564 * 117.90253 * 179.97438 * 11 10 9 13 13 C 1.38819 * 118.04816 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.98604 * 179.97438 * 13 12 11 15 15 F 1.39904 * 109.47539 * 184.97498 * 14 13 12 16 16 F 1.39898 * 109.47213 * 304.97746 * 14 13 12 17 17 F 1.39899 * 109.46954 * 64.97750 * 14 13 12 18 18 N 1.31864 * 120.03117 * 359.97028 * 13 12 11 19 19 N 1.28350 * 122.28656 * 0.02620 * 18 13 12 20 20 H 0.97009 * 119.99818 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00283 * 0.02562 * 9 7 2 22 22 H 1.07991 * 121.04707 * 359.97438 * 11 10 9 23 23 H 1.08000 * 120.97435 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2124 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0097 -1.2023 0.0005 8 1 3.0897 -1.2023 0.0010 9 7 1.3251 -2.3879 0.0005 10 6 2.0195 -3.5906 0.0005 11 6 3.4153 -3.5946 0.0011 12 6 4.0601 -4.8211 0.0016 13 6 3.2796 -5.9690 0.0010 14 6 3.9354 -7.3258 0.0010 15 9 2.9554 -8.3176 -0.1141 16 9 4.8195 -7.4163 -1.0794 17 9 4.6401 -7.5031 1.1964 18 7 1.9644 -5.8728 0.0006 19 7 1.3598 -4.7406 0.0002 20 1 -0.4850 0.8401 -0.0004 21 1 0.3551 -2.3879 -0.0002 22 1 3.9749 -2.6710 0.0011 23 1 5.1384 -4.8821 0.0024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190167243.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:10 Heat of formation + Delta-G solvation = -110.435639 kcal Electronic energy + Delta-G solvation = -15714.484582 eV Core-core repulsion = 12340.604644 eV Total energy + Delta-G solvation = -3373.879939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.02945 -48.54624 -48.51483 -41.61361 -37.86368 -34.46846 -34.00261 -31.74973 -28.13712 -26.29521 -25.17592 -23.52647 -20.40857 -19.42842 -19.40515 -19.26512 -18.65315 -17.79173 -16.51129 -15.93776 -15.62022 -15.37176 -15.31759 -15.22714 -14.97142 -14.71477 -14.68463 -14.46297 -13.64060 -13.59911 -13.49966 -12.55071 -12.49617 -12.21208 -11.98553 -11.11070 -11.04057 -10.44724 -9.49740 -8.74955 -6.04488 0.08612 0.16908 1.42871 1.50056 1.55537 1.66238 2.12027 2.49790 2.59449 2.93242 3.05704 3.15295 3.56892 3.85754 4.03096 4.19589 4.23945 4.81100 5.02964 5.18444 5.29817 5.59265 6.47538 6.98744 7.12200 8.03269 8.40438 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.058946 B = 0.005843 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.893897 B = 4790.580724 C = 5090.984113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.012 4.012 3 Si 1.014 2.986 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.329 4.329 8 H 0.129 0.871 9 N -0.504 5.504 10 C 0.273 3.727 11 C -0.193 4.193 12 C -0.033 4.033 13 C -0.173 4.173 14 C 0.551 3.449 15 F -0.177 7.177 16 F -0.173 7.173 17 F -0.175 7.175 18 N -0.167 5.167 19 N -0.367 5.367 20 H 0.288 0.712 21 H 0.401 0.599 22 H 0.164 0.836 23 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.576 -3.852 -0.010 10.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.216 4.216 3 Si 0.834 3.166 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.460 4.460 8 H 0.147 0.853 9 N -0.106 5.106 10 C 0.025 3.975 11 C -0.226 4.226 12 C -0.060 4.060 13 C -0.326 4.326 14 C 0.495 3.505 15 F -0.158 7.158 16 F -0.154 7.154 17 F -0.156 7.156 18 N -0.015 5.015 19 N -0.230 5.230 20 H 0.098 0.902 21 H 0.236 0.764 22 H 0.181 0.819 23 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.004 -4.061 -0.009 8.976 hybrid contribution 0.777 1.148 0.002 1.386 sum 8.781 -2.913 -0.007 9.252 Atomic orbital electron populations 1.69792 1.07986 1.30953 1.44782 1.26557 0.96555 1.03866 0.94671 0.84656 0.77564 0.74317 0.80032 1.18188 1.20494 1.18200 1.20377 0.94434 0.81921 1.49233 0.85349 1.41028 1.09020 1.01771 1.58759 1.20192 0.91396 0.87949 0.97937 1.21709 0.92478 0.99991 1.08434 1.21796 1.02198 0.89935 0.92047 1.21896 0.93979 0.94101 1.22659 1.17257 0.75818 0.83818 0.73602 1.93167 1.62711 1.64201 1.95722 1.93186 1.69855 1.96622 1.55773 1.93189 1.79652 1.95944 1.46857 1.72224 1.08565 1.18071 1.02646 1.72835 1.30063 0.93465 1.26632 0.90236 0.76444 0.81871 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.12 13.05 21.65 0.28 -43.83 14 2 C -0.01 -0.54 5.50 84.87 0.47 -0.07 14 3 Si 1.01 34.61 29.55 68.60 2.03 36.64 14 4 H -0.26 -8.38 7.11 99.48 0.71 -7.67 14 5 H -0.28 -9.60 7.11 99.48 0.71 -8.89 14 6 H -0.26 -8.38 7.11 99.48 0.71 -7.68 14 7 C -0.33 -14.94 9.56 84.04 0.80 -14.14 14 8 H 0.13 5.17 5.71 -2.91 -0.02 5.15 14 9 N -0.50 -23.84 5.44 -188.84 -1.03 -24.87 14 10 C 0.27 12.24 7.71 133.16 1.03 13.26 14 11 C -0.19 -7.18 9.42 22.67 0.21 -6.97 14 12 C -0.03 -1.09 9.74 22.49 0.22 -0.87 14 13 C -0.17 -6.43 6.34 42.69 0.27 -6.15 14 14 C 0.55 17.64 3.33 71.24 0.24 17.88 14 15 F -0.18 -6.02 16.87 44.97 0.76 -5.26 14 16 F -0.17 -5.03 17.17 44.97 0.77 -4.26 14 17 F -0.17 -5.20 17.29 44.97 0.78 -4.42 14 18 N -0.17 -7.32 10.90 -47.53 -0.52 -7.84 14 19 N -0.37 -17.28 11.54 -55.10 -0.64 -17.92 14 20 H 0.29 13.17 8.31 -92.70 -0.77 12.40 14 21 H 0.40 20.11 8.02 -92.70 -0.74 19.37 14 22 H 0.16 5.34 6.05 -2.91 -0.02 5.33 14 23 H 0.18 4.20 8.06 -2.91 -0.02 4.18 14 Total: -1.00 -52.87 230.88 6.22 -46.65 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.55 Total: 22.19 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 3.24 Total: 2.94 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -1.90 Total: -94.47 kcal Atomic # 9 Polarization: -16.25 SS G_CDS: 2.31 Total: -13.95 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 2.03 Total: 36.64 kcal Total: -52.87 6.22 -46.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190167243.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.786 kcal (2) G-P(sol) polarization free energy of solvation -52.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds