Wall clock time and date at job start Mon Mar 30 2020 03:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 11 11 N 1.32221 * 119.98287 * 269.72433 * 10 9 7 12 12 C 1.32397 * 120.01514 * 179.72784 * 11 10 9 13 13 Cl 1.73606 * 120.00715 * 180.27372 * 12 11 10 14 14 N 1.32351 * 119.98432 * 0.54567 * 12 11 10 15 15 C 1.32355 * 119.96661 * 359.72995 * 14 12 11 16 16 Cl 1.73595 * 120.00739 * 180.02562 * 15 14 12 17 17 N 1.32213 * 119.98524 * 89.99995 * 10 9 7 18 18 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 20 20 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0140 -2.6147 0.0084 11 7 4.2390 -3.2301 1.1568 12 6 4.6753 -4.4801 1.1640 13 17 4.9639 -5.2903 2.6720 14 7 4.8964 -5.1101 0.0212 15 6 4.6761 -4.4916 -1.1280 16 17 4.9652 -5.3171 -2.6275 17 7 4.2347 -3.2433 -1.1336 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6845 -0.8913 20 1 3.8746 -0.6756 0.8886 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213123239.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:27 Heat of formation + Delta-G solvation = 51.079530 kcal Electronic energy + Delta-G solvation = -11621.678156 eV Core-core repulsion = 9099.102001 eV Total energy + Delta-G solvation = -2522.576154 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 232.982 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.65838 -37.26309 -37.05771 -34.79631 -33.54853 -32.79508 -29.81129 -25.15780 -24.93632 -21.91239 -19.03665 -17.70379 -17.15524 -15.84472 -15.35865 -14.52240 -14.23293 -13.53058 -13.01818 -12.48216 -12.16761 -12.05461 -11.75434 -11.49637 -11.11963 -10.76674 -10.57125 -10.29682 -9.95373 -9.72610 -9.70982 -9.54652 -8.75735 -6.24746 -4.28600 0.62206 0.79573 0.89056 1.49380 3.20692 3.28223 3.28445 3.63155 3.73505 4.09224 4.26090 4.82387 5.08418 5.98397 6.22189 6.46800 6.63785 6.80782 7.31968 8.08470 8.20807 8.71594 9.29393 10.87357 Molecular weight = 232.98amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.008262 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.566717 B = 3388.269245 C = 4147.375919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.073 0.927 9 C 0.044 3.956 10 C 0.450 3.550 11 N -0.533 5.533 12 C 0.423 3.577 13 Cl 0.042 6.958 14 N -0.557 5.557 15 C 0.423 3.577 16 Cl 0.042 6.958 17 N -0.533 5.533 18 H 0.269 0.731 19 H 0.058 0.942 20 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.730 -7.797 0.054 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.091 0.909 9 C 0.005 3.995 10 C 0.179 3.821 11 N -0.256 5.256 12 C 0.120 3.880 13 Cl 0.070 6.930 14 N -0.285 5.285 15 C 0.120 3.880 16 Cl 0.070 6.930 17 N -0.256 5.256 18 H 0.079 0.921 19 H 0.076 0.924 20 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.616 -7.801 0.058 13.174 hybrid contribution 0.333 0.416 -0.009 0.533 sum 10.949 -7.386 0.050 13.207 Atomic orbital electron populations 1.69855 1.06250 1.27531 1.48854 1.24843 0.94814 0.98972 0.93781 0.86787 0.80431 0.83277 0.78995 1.19665 1.20751 1.18642 1.20464 0.86268 0.95317 1.53798 0.90868 1.18966 0.98578 0.81877 1.00093 1.24610 0.80098 0.97730 0.79624 1.68669 1.15813 1.08477 1.32627 1.23251 0.89131 0.87214 0.88419 1.98448 1.93229 1.76904 1.24437 1.67868 1.23181 1.40032 0.97407 1.23254 0.89123 0.87288 0.88361 1.98447 1.93225 1.76088 1.25252 1.68671 1.15792 1.08141 1.32991 0.92063 0.92443 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.96 55.43 0.77 -25.28 14 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 14 3 Si 0.88 19.98 27.47 -169.99 -4.67 15.31 14 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 14 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 14 6 H -0.26 -5.59 6.53 56.52 0.37 -5.23 14 7 C -0.52 -14.16 9.65 -34.44 -0.33 -14.49 14 8 H 0.07 2.22 7.98 -52.49 -0.42 1.80 14 9 C 0.04 1.01 4.53 -29.03 -0.13 0.87 14 10 C 0.45 9.70 6.88 -156.47 -1.08 8.62 14 11 N -0.53 -10.91 10.42 -9.14 -0.10 -11.01 14 12 C 0.42 7.65 8.26 -91.15 -0.75 6.90 14 13 Cl 0.04 0.60 29.30 -51.86 -1.52 -0.92 14 14 N -0.56 -9.91 10.48 -10.03 -0.11 -10.02 14 15 C 0.42 7.64 8.26 -91.15 -0.75 6.89 14 16 Cl 0.04 0.60 29.30 -51.86 -1.52 -0.92 14 17 N -0.53 -10.90 10.42 -9.15 -0.10 -11.00 14 18 H 0.27 7.33 8.31 -40.82 -0.34 6.99 14 19 H 0.06 1.25 7.58 -51.93 -0.39 0.86 14 20 H 0.06 1.36 7.18 -51.93 -0.37 0.99 14 LS Contribution 226.20 15.07 3.41 3.41 Total: -1.00 -28.42 226.20 -7.32 -35.73 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: -0.35 Total: -6.21 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -3.14 Total: 10.89 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.48 Total: -57.30 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Atomic # 17 Polarization: 1.20 SS G_CDS: -3.04 Total: -1.84 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.42 -7.32 -35.73 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213123239.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.814 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds