Wall clock time and date at job start Mon Mar 30 2020 03:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46722 * 110.99737 * 2 1 4 4 C 1.53389 * 108.22585 * 284.38413 * 3 2 1 5 5 N 1.46711 * 108.25175 * 293.48657 * 4 3 2 6 6 C 1.46901 * 111.00073 * 284.63038 * 5 4 3 7 7 C 1.38829 * 112.22645 * 49.48898 * 5 4 3 8 8 C 1.41873 * 118.03962 * 162.22851 * 7 5 4 9 9 C 1.41073 * 120.10872 * 359.45266 * 8 7 5 10 10 H 1.08002 * 119.99889 * 333.82807 * 9 8 7 11 11 C 1.39902 * 120.00444 * 153.82236 * 9 8 7 12 12 N 1.30894 * 119.99845 * 343.53523 * 11 9 8 13 13 Si 1.86797 * 120.00363 * 163.53553 * 11 9 8 14 14 H 1.48506 * 109.47186 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47262 * 120.00431 * 13 11 9 16 16 H 1.48502 * 109.47294 * 240.00438 * 13 11 9 17 17 C 1.40613 * 119.78861 * 179.42599 * 8 7 5 18 18 C 1.36438 * 119.88944 * 0.07482 * 17 8 7 19 19 C 1.38619 * 120.52196 * 0.32906 * 18 17 8 20 20 C 1.38802 * 122.71716 * 341.92891 * 7 5 4 21 21 H 1.08994 * 109.47314 * 56.04427 * 1 2 3 22 22 H 1.09007 * 109.47323 * 176.05066 * 1 2 3 23 23 H 1.09006 * 109.46945 * 296.04454 * 1 2 3 24 24 H 1.09003 * 109.71381 * 164.70089 * 3 2 1 25 25 H 1.09004 * 109.71938 * 44.06924 * 3 2 1 26 26 H 1.09000 * 109.71018 * 173.79515 * 4 3 2 27 27 H 1.09001 * 109.70608 * 53.17621 * 4 3 2 28 28 H 1.08997 * 109.46782 * 185.54924 * 6 5 4 29 29 H 1.09005 * 109.46768 * 305.54428 * 6 5 4 30 30 H 1.08995 * 109.47292 * 65.54415 * 6 5 4 31 31 H 0.97002 * 120.00289 * 179.97438 * 12 11 9 32 32 H 1.07991 * 120.05280 * 180.02562 * 17 8 7 33 33 H 1.07999 * 119.73219 * 180.02562 * 18 17 8 34 34 H 1.08005 * 119.52433 * 179.71315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3698 0.0000 4 6 1.8288 1.9474 -1.4113 5 7 2.7054 1.1999 -2.3197 6 6 4.1084 1.5979 -2.1435 7 6 2.5567 -0.1734 -2.1813 8 6 3.0333 -1.0046 -3.2276 9 6 3.6270 -0.4317 -4.3719 10 1 3.3637 0.5719 -4.6717 11 6 4.5570 -1.1634 -5.1182 12 7 5.1187 -2.2272 -4.6022 13 14 4.9971 -0.6225 -6.8511 14 1 4.2300 0.6009 -7.1977 15 1 6.4515 -0.3317 -6.9246 16 1 4.6601 -1.7064 -7.8087 17 6 2.9124 -2.4015 -3.1202 18 6 2.3365 -2.9509 -2.0121 19 6 1.8619 -2.1423 -0.9911 20 6 1.9707 -0.7560 -1.0660 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3634 -1.0253 -0.0708 23 1 -0.3633 0.4512 0.9234 24 1 3.0506 1.3584 0.2708 25 1 1.4382 1.9773 0.7137 26 1 2.1099 3.0005 -1.4129 27 1 0.7922 1.8426 -1.7317 28 1 4.7237 1.1023 -2.8944 29 1 4.1965 2.6785 -2.2570 30 1 4.4460 1.3084 -1.1484 31 1 5.7632 -2.7348 -5.1197 32 1 3.2741 -3.0382 -3.9139 33 1 2.2454 -4.0240 -1.9320 34 1 1.4047 -2.5942 -0.1231 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215073844.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:19 Heat of formation + Delta-G solvation = 43.646778 kcal Electronic energy + Delta-G solvation = -16815.292952 eV Core-core repulsion = 14327.043369 eV Total energy + Delta-G solvation = -2488.249583 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.88171 -36.08254 -35.09373 -33.25201 -29.54258 -29.10686 -27.74711 -25.77466 -25.12067 -23.18684 -22.41365 -20.25307 -18.69633 -17.09077 -15.64484 -15.49744 -15.23222 -14.73928 -13.92658 -13.78646 -13.40813 -13.34789 -12.77533 -12.30259 -12.02367 -11.92581 -11.59834 -11.44106 -11.22905 -11.09289 -10.86738 -10.68984 -10.46548 -10.35065 -9.80831 -9.51801 -9.16967 -8.82532 -7.79144 -6.90607 -6.79976 -6.58682 -4.25589 2.78061 2.90675 3.10252 3.16613 3.23118 3.96842 4.48653 4.67677 4.87322 5.39755 5.53111 5.57972 5.66207 5.78905 5.88968 6.01461 6.12783 6.16832 6.25764 6.40878 6.47457 6.57887 6.85748 6.90128 7.01517 7.17892 7.26656 7.47199 7.63872 7.77169 7.95481 8.10910 8.23038 8.38528 8.46129 8.76645 8.95010 9.12975 10.22333 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.009888 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.176802 B = 2830.990434 C = 3438.070520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.496 5.496 3 C 0.020 3.980 4 C 0.021 3.979 5 N -0.469 5.469 6 C 0.030 3.970 7 C -0.048 4.048 8 C 0.126 3.874 9 C -0.439 4.439 10 H 0.087 0.913 11 C 0.072 3.928 12 N -0.795 5.795 13 Si 0.905 3.095 14 H -0.260 1.260 15 H -0.276 1.276 16 H -0.273 1.273 17 C -0.164 4.164 18 C -0.103 4.103 19 C -0.226 4.226 20 C 0.084 3.916 21 H 0.027 0.973 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.015 0.985 31 H 0.278 0.722 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 4.642 3.427 6.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.214 5.214 3 C -0.110 4.110 4 C -0.109 4.109 5 N -0.185 5.185 6 C -0.116 4.116 7 C -0.147 4.147 8 C 0.121 3.879 9 C -0.469 4.469 10 H 0.105 0.895 11 C -0.145 4.145 12 N -0.420 5.420 13 Si 0.730 3.270 14 H -0.183 1.183 15 H -0.202 1.202 16 H -0.199 1.199 17 C -0.185 4.185 18 C -0.122 4.122 19 C -0.247 4.247 20 C -0.013 4.013 21 H 0.046 0.954 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.240 4.435 3.351 6.434 hybrid contribution 0.278 0.318 -0.571 0.710 sum -2.962 4.753 2.779 6.252 Atomic orbital electron populations 1.22400 0.87036 1.02153 0.99749 1.59297 1.07256 1.12118 1.42689 1.22756 1.01057 0.89379 0.97770 1.22739 0.98391 0.97899 0.91869 1.58611 1.05876 1.04314 1.49653 1.22396 0.89891 0.98963 1.00347 1.18572 1.14779 0.87286 0.94073 1.17345 0.89599 0.90832 0.90076 1.19535 1.19132 1.01450 1.06741 0.89454 1.25966 0.94964 0.94131 0.99477 1.69879 1.20661 1.14824 1.36679 0.86306 0.78604 0.79900 0.82196 1.18341 1.20172 1.19872 1.20925 1.03662 0.95273 0.98599 1.20272 0.99702 0.97168 0.95105 1.19979 1.12933 0.91154 1.00679 1.18433 1.02799 0.92478 0.87593 0.95426 0.91228 0.92226 0.90651 0.91010 0.90970 0.91114 0.89235 0.93252 0.96664 0.91077 0.86385 0.89351 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.35 60.07 0.56 1.11 16 2 N -0.50 -9.78 4.86 -178.67 -0.87 -10.65 16 3 C 0.02 0.35 5.88 -3.72 -0.02 0.33 16 4 C 0.02 0.38 5.87 -3.73 -0.02 0.35 16 5 N -0.47 -10.21 4.11 -178.20 -0.73 -10.95 16 6 C 0.03 0.61 8.93 60.06 0.54 1.15 16 7 C -0.05 -1.18 5.18 -83.09 -0.43 -1.61 16 8 C 0.13 3.33 5.47 -106.54 -0.58 2.75 16 9 C -0.44 -11.41 6.76 -37.88 -0.26 -11.67 16 10 H 0.09 2.28 7.43 -52.49 -0.39 1.89 16 11 C 0.07 1.77 5.15 -17.33 -0.09 1.68 16 12 N -0.79 -20.28 10.97 55.55 0.61 -19.67 16 13 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 14 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 C -0.16 -4.28 8.61 -39.34 -0.34 -4.62 16 18 C -0.10 -2.46 9.96 -40.09 -0.40 -2.86 16 19 C -0.23 -5.26 9.18 -39.06 -0.36 -5.62 16 20 C 0.08 1.95 5.16 -83.54 -0.43 1.52 16 21 H 0.03 0.46 6.57 -51.93 -0.34 0.12 16 22 H 0.07 1.16 7.51 -51.93 -0.39 0.77 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.08 1.38 6.72 -51.93 -0.35 1.03 16 25 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 26 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 27 H 0.07 1.29 6.58 -51.93 -0.34 0.94 16 28 H 0.09 2.02 6.28 -51.93 -0.33 1.69 16 29 H 0.05 0.84 7.97 -51.93 -0.41 0.43 16 30 H 0.01 0.30 6.85 -51.93 -0.36 -0.05 16 31 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 32 H 0.12 3.16 6.21 -52.49 -0.33 2.83 16 33 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.09 1.93 8.02 -52.48 -0.42 1.51 16 LS Contribution 266.86 15.07 4.02 4.02 Total: -1.00 -27.67 266.86 -8.29 -35.95 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.46 Total: 5.14 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.83 Total: -17.49 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.99 Total: -41.27 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.67 -8.29 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215073844.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.601 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds