Wall clock time and date at job start Mon Mar 30 2020 03:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46722 * 110.99737 * 2 1 4 4 C 1.53389 * 108.22585 * 284.38413 * 3 2 1 5 5 N 1.46711 * 108.25175 * 293.48657 * 4 3 2 6 6 C 1.46901 * 111.00073 * 284.63038 * 5 4 3 7 7 C 1.38829 * 112.22645 * 49.48898 * 5 4 3 8 8 C 1.41873 * 118.03962 * 162.22851 * 7 5 4 9 9 C 1.41073 * 120.10872 * 359.45266 * 8 7 5 10 10 H 1.08002 * 119.99889 * 333.82807 * 9 8 7 11 11 C 1.39902 * 120.00444 * 153.82236 * 9 8 7 12 12 N 1.30894 * 119.99845 * 343.53523 * 11 9 8 13 13 Si 1.86797 * 120.00363 * 163.53553 * 11 9 8 14 14 H 1.48506 * 109.47186 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47262 * 120.00431 * 13 11 9 16 16 H 1.48502 * 109.47294 * 240.00438 * 13 11 9 17 17 C 1.40613 * 119.78861 * 179.42599 * 8 7 5 18 18 C 1.36438 * 119.88944 * 0.07482 * 17 8 7 19 19 C 1.38619 * 120.52196 * 0.32906 * 18 17 8 20 20 C 1.38802 * 122.71716 * 341.92891 * 7 5 4 21 21 H 1.08994 * 109.47314 * 56.04427 * 1 2 3 22 22 H 1.09007 * 109.47323 * 176.05066 * 1 2 3 23 23 H 1.09006 * 109.46945 * 296.04454 * 1 2 3 24 24 H 1.09003 * 109.71381 * 164.70089 * 3 2 1 25 25 H 1.09004 * 109.71938 * 44.06924 * 3 2 1 26 26 H 1.09000 * 109.71018 * 173.79515 * 4 3 2 27 27 H 1.09001 * 109.70608 * 53.17621 * 4 3 2 28 28 H 1.08997 * 109.46782 * 185.54924 * 6 5 4 29 29 H 1.09005 * 109.46768 * 305.54428 * 6 5 4 30 30 H 1.08995 * 109.47292 * 65.54415 * 6 5 4 31 31 H 0.97002 * 120.00289 * 179.97438 * 12 11 9 32 32 H 1.07991 * 120.05280 * 180.02562 * 17 8 7 33 33 H 1.07999 * 119.73219 * 180.02562 * 18 17 8 34 34 H 1.08005 * 119.52433 * 179.71315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3698 0.0000 4 6 1.8288 1.9474 -1.4113 5 7 2.7054 1.1999 -2.3197 6 6 4.1084 1.5979 -2.1435 7 6 2.5567 -0.1734 -2.1813 8 6 3.0333 -1.0046 -3.2276 9 6 3.6270 -0.4317 -4.3719 10 1 3.3637 0.5719 -4.6717 11 6 4.5570 -1.1634 -5.1182 12 7 5.1187 -2.2272 -4.6022 13 14 4.9971 -0.6225 -6.8511 14 1 4.2300 0.6009 -7.1977 15 1 6.4515 -0.3317 -6.9246 16 1 4.6601 -1.7064 -7.8087 17 6 2.9124 -2.4015 -3.1202 18 6 2.3365 -2.9509 -2.0121 19 6 1.8619 -2.1423 -0.9911 20 6 1.9707 -0.7560 -1.0660 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3634 -1.0253 -0.0708 23 1 -0.3633 0.4512 0.9234 24 1 3.0506 1.3584 0.2708 25 1 1.4382 1.9773 0.7137 26 1 2.1099 3.0005 -1.4129 27 1 0.7922 1.8426 -1.7317 28 1 4.7237 1.1023 -2.8944 29 1 4.1965 2.6785 -2.2570 30 1 4.4460 1.3084 -1.1484 31 1 5.7632 -2.7348 -5.1197 32 1 3.2741 -3.0382 -3.9139 33 1 2.2454 -4.0240 -1.9320 34 1 1.4047 -2.5942 -0.1231 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215073844.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:19 Heat of formation + Delta-G solvation = 26.676469 kcal Electronic energy + Delta-G solvation = -16816.028840 eV Core-core repulsion = 14327.043369 eV Total energy + Delta-G solvation = -2488.985471 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.51768 -37.83814 -36.72731 -35.08061 -31.27543 -30.87464 -29.29022 -27.40176 -26.83992 -24.82731 -24.05560 -22.06196 -20.37093 -18.88992 -17.44165 -17.15077 -16.86559 -16.40771 -15.46554 -15.29946 -15.07882 -14.98644 -14.51693 -14.00206 -13.60535 -13.39343 -13.27126 -12.93465 -12.87906 -12.69358 -12.55483 -12.38295 -12.12147 -11.95014 -11.58183 -11.34280 -11.00261 -10.50019 -9.54384 -8.72266 -8.54899 -8.38177 -6.19668 0.97906 1.06399 1.40183 1.52142 1.54741 2.23934 2.74517 3.06915 3.27366 3.77144 4.01012 4.17474 4.22871 4.44646 4.54353 4.57759 4.63380 4.67574 4.72972 4.80613 4.94286 5.00991 5.13330 5.17140 5.22958 5.32322 5.48881 5.74375 5.93708 6.01797 6.16437 6.26480 6.47935 6.55257 6.63202 6.87721 7.05122 7.27542 8.39213 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.009888 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.176802 B = 2830.990434 C = 3438.070520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.505 5.505 3 C 0.022 3.978 4 C 0.022 3.978 5 N -0.486 5.486 6 C 0.040 3.960 7 C -0.058 4.058 8 C 0.095 3.905 9 C -0.459 4.459 10 H 0.078 0.922 11 C 0.033 3.967 12 N -0.826 5.826 13 Si 0.976 3.024 14 H -0.260 1.260 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.193 4.193 18 C -0.108 4.108 19 C -0.232 4.232 20 C 0.081 3.919 21 H 0.025 0.975 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.011 0.989 31 H 0.285 0.715 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 6.208 4.263 8.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.222 5.222 3 C -0.107 4.107 4 C -0.107 4.107 5 N -0.203 5.203 6 C -0.106 4.106 7 C -0.157 4.157 8 C 0.090 3.910 9 C -0.489 4.489 10 H 0.096 0.904 11 C -0.181 4.181 12 N -0.453 5.453 13 Si 0.797 3.203 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.193 1.193 17 C -0.214 4.214 18 C -0.127 4.127 19 C -0.253 4.253 20 C -0.017 4.017 21 H 0.044 0.956 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.082 0.918 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.029 0.971 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.993 6.012 4.212 8.356 hybrid contribution 0.446 -0.135 -0.700 0.841 sum -3.547 5.877 3.511 7.710 Atomic orbital electron populations 1.22472 0.84843 1.02300 1.01519 1.59304 1.09059 1.13234 1.40639 1.22833 1.01007 0.88554 0.98270 1.22855 0.97471 0.99056 0.91350 1.58515 1.06988 1.03310 1.51453 1.22281 0.88809 1.00608 0.98948 1.18788 1.14359 0.88663 0.93898 1.17728 0.90535 0.91492 0.91207 1.19564 1.20214 1.01361 1.07753 0.90403 1.26724 0.94410 0.94006 1.02962 1.69936 1.21244 1.15875 1.38197 0.85249 0.78514 0.79346 0.77151 1.18375 1.19244 1.19271 1.20878 1.05770 0.95399 0.99343 1.20508 0.99065 0.98452 0.94676 1.20253 1.12603 0.91570 1.00907 1.18674 1.02043 0.93014 0.87987 0.95605 0.91773 0.88640 0.91840 0.87025 0.87858 0.91347 0.92352 0.89831 0.97074 0.90443 0.88151 0.87379 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.35 127.69 1.19 2.22 16 2 N -0.51 -18.64 4.86 -719.20 -3.49 -22.13 16 3 C 0.02 0.70 5.88 86.47 0.51 1.21 16 4 C 0.02 0.71 5.87 86.47 0.51 1.22 16 5 N -0.49 -20.81 4.11 -717.71 -2.95 -23.76 16 6 C 0.04 1.58 8.93 127.69 1.14 2.72 16 7 C -0.06 -2.84 5.18 39.07 0.20 -2.63 16 8 C 0.09 5.16 5.47 -21.10 -0.12 5.05 16 9 C -0.46 -24.66 6.76 23.37 0.16 -24.50 16 10 H 0.08 4.19 7.43 -2.91 -0.02 4.16 16 11 C 0.03 1.68 5.15 85.24 0.44 2.12 16 12 N -0.83 -43.52 10.97 21.82 0.24 -43.28 16 13 Si 0.98 38.91 29.59 68.60 2.03 40.94 16 14 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 15 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 16 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 17 C -0.19 -10.45 8.61 22.43 0.19 -10.26 16 18 C -0.11 -5.22 9.96 21.94 0.22 -5.00 16 19 C -0.23 -10.67 9.18 22.61 0.21 -10.47 16 20 C 0.08 3.69 5.16 38.22 0.20 3.89 16 21 H 0.03 0.78 6.57 -2.39 -0.02 0.77 16 22 H 0.06 1.98 7.51 -2.38 -0.02 1.96 16 23 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 24 H 0.06 2.16 6.72 -2.39 -0.02 2.15 16 25 H 0.11 2.64 8.00 -2.39 -0.02 2.63 16 26 H 0.10 2.76 7.89 -2.39 -0.02 2.74 16 27 H 0.07 2.30 6.58 -2.39 -0.02 2.29 16 28 H 0.06 2.69 6.28 -2.39 -0.01 2.67 16 29 H 0.08 2.69 7.97 -2.38 -0.02 2.67 16 30 H 0.01 0.43 6.85 -2.39 -0.02 0.42 16 31 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 32 H 0.10 5.66 6.21 -2.92 -0.02 5.64 16 33 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.11 4.48 8.02 -2.91 -0.02 4.46 16 Total: -1.00 -60.96 266.86 1.77 -59.19 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 1.09 Total: 23.48 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 4.85 Total: -34.44 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -6.20 Total: -89.17 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -60.96 1.77 -59.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215073844.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.865 kcal (2) G-P(sol) polarization free energy of solvation -60.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds