Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46667 * 110.99866 * 2 1 4 4 C 1.53373 * 108.32625 * 174.67733 * 3 2 1 5 5 N 1.46715 * 108.23302 * 293.26960 * 4 3 2 6 6 C 1.46902 * 110.99925 * 174.05090 * 5 4 3 7 7 C 1.39811 * 112.06881 * 49.31600 * 5 4 3 8 8 C 1.38408 * 117.80927 * 162.14273 * 7 5 4 9 9 C 1.40603 * 120.07958 * 179.30909 * 8 7 5 10 10 C 1.41108 * 120.23173 * 179.78129 * 9 8 7 11 11 H 1.07998 * 120.00063 * 334.48707 * 10 9 8 12 12 C 1.39829 * 119.99994 * 154.48251 * 10 9 8 13 13 N 1.30923 * 119.99879 * 343.10607 * 12 10 9 14 14 Si 1.86800 * 120.00391 * 163.10942 * 12 10 9 15 15 H 1.48500 * 109.47102 * 59.99747 * 14 12 10 16 16 H 1.48496 * 109.47520 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46885 * 300.00420 * 14 12 10 18 18 C 1.40932 * 119.53495 * 359.78255 * 9 8 7 19 19 C 1.36132 * 119.92924 * 0.45420 * 18 9 8 20 20 C 1.38988 * 111.00188 * 125.54494 * 2 1 3 21 21 H 1.09003 * 109.47557 * 290.49941 * 1 2 3 22 22 H 1.09002 * 109.47323 * 50.50240 * 1 2 3 23 23 H 1.09003 * 109.46754 * 170.49933 * 1 2 3 24 24 H 1.08997 * 109.69434 * 54.96456 * 3 2 1 25 25 H 1.09002 * 109.72600 * 294.40506 * 3 2 1 26 26 H 1.09005 * 109.70426 * 173.58836 * 4 3 2 27 27 H 1.08998 * 109.70979 * 52.96122 * 4 3 2 28 28 H 1.08998 * 109.46781 * 294.66431 * 6 5 4 29 29 H 1.09005 * 109.46804 * 54.66092 * 6 5 4 30 30 H 1.08995 * 109.47377 * 174.66282 * 6 5 4 31 31 H 1.07998 * 119.96560 * 359.27947 * 8 7 5 32 32 H 0.97005 * 120.00298 * 179.97438 * 13 12 10 33 33 H 1.08004 * 120.03362 * 180.42752 * 18 9 8 34 34 H 1.08001 * 119.58283 * 180.16211 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9945 1.3693 0.0000 4 6 3.5207 1.3000 0.1351 5 7 3.8403 0.7722 1.4662 6 6 5.2848 0.5474 1.6105 7 6 3.1208 -0.3908 1.7567 8 6 3.5809 -1.1948 2.7851 9 6 2.8858 -2.3681 3.1273 10 6 3.3546 -3.1925 4.1722 11 1 4.4022 -3.1885 4.4345 12 6 2.4627 -4.0145 4.8679 13 7 1.1745 -3.7931 4.7938 14 14 3.1092 -5.4286 5.9033 15 1 4.0072 -4.8980 6.9603 16 1 1.9696 -6.1421 6.5335 17 1 3.8649 -6.3701 5.0385 18 6 1.7175 -2.7149 2.4195 19 6 1.2760 -1.9200 1.4064 20 6 1.9671 -0.7543 1.0558 21 1 -0.3634 0.3599 0.9626 22 1 -0.3634 0.6536 -0.7930 23 1 -0.3633 -1.0136 -0.1696 24 1 1.5762 1.9233 0.8403 25 1 1.7306 1.8647 -0.9344 26 1 3.9452 2.2978 0.0236 27 1 3.9279 0.6391 -0.6301 28 1 5.6003 -0.2392 0.9250 29 1 5.8207 1.4678 1.3786 30 1 5.5053 0.2467 2.6347 31 1 4.4752 -0.9209 3.3251 32 1 0.5557 -4.3635 5.2762 33 1 1.1734 -3.6107 2.6802 34 1 0.3786 -2.1897 0.8694 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215073922.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = 25.316665 kcal Electronic energy + Delta-G solvation = -16403.462547 eV Core-core repulsion = 13914.418110 eV Total energy + Delta-G solvation = -2489.044437 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37016 -37.83622 -37.26104 -35.02197 -31.42592 -30.87423 -30.10750 -27.43214 -26.47753 -24.74722 -24.00775 -21.75249 -20.71040 -19.01639 -17.84233 -17.18773 -16.79197 -16.56485 -15.70449 -15.15497 -15.01100 -14.92117 -14.70963 -14.24771 -13.65467 -13.45483 -13.08832 -13.00795 -12.78718 -12.71575 -12.67642 -12.46570 -12.26110 -12.02358 -11.57251 -11.26932 -11.09299 -10.45463 -10.24390 -8.93861 -8.57280 -8.12010 -6.21194 0.94498 1.08979 1.38379 1.49364 1.52662 2.22398 2.63625 3.05928 3.17868 3.74892 3.91802 4.08665 4.22919 4.35422 4.52998 4.56785 4.59671 4.61843 4.77891 4.82672 4.87220 4.96597 5.00443 5.09835 5.10459 5.25506 5.33192 5.54211 5.72929 5.94998 6.04000 6.22568 6.43091 6.48399 6.58312 6.79508 6.98318 7.11868 8.37591 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.035473 B = 0.007942 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.136309 B = 3524.589863 C = 4203.969656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.493 5.493 3 C 0.052 3.948 4 C 0.054 3.946 5 N -0.508 5.508 6 C 0.032 3.968 7 C 0.098 3.902 8 C -0.257 4.257 9 C 0.084 3.916 10 C -0.499 4.499 11 H 0.073 0.927 12 C 0.035 3.965 13 N -0.830 5.830 14 Si 0.982 3.018 15 H -0.260 1.260 16 H -0.267 1.267 17 H -0.261 1.261 18 C -0.180 4.180 19 C -0.116 4.116 20 C -0.047 4.047 21 H 0.015 0.985 22 H 0.095 0.905 23 H 0.068 0.932 24 H 0.033 0.967 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.043 0.957 28 H 0.025 0.975 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.287 0.713 33 H 0.103 0.897 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 6.468 -6.818 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.211 5.211 3 C -0.075 4.075 4 C -0.072 4.072 5 N -0.224 5.224 6 C -0.114 4.114 7 C -0.001 4.001 8 C -0.280 4.280 9 C 0.081 3.919 10 C -0.529 4.529 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.456 5.456 14 Si 0.803 3.197 15 H -0.184 1.184 16 H -0.192 1.192 17 H -0.186 1.186 18 C -0.201 4.201 19 C -0.136 4.136 20 C -0.146 4.146 21 H 0.034 0.966 22 H 0.114 0.886 23 H 0.087 0.913 24 H 0.052 0.948 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.490 6.644 -6.889 9.686 hybrid contribution -0.010 -1.003 0.949 1.381 sum 1.480 5.642 -5.939 8.324 Atomic orbital electron populations 1.22491 0.85827 1.02918 1.00447 1.58976 1.08626 1.12729 1.40748 1.22361 0.94525 0.88377 1.02244 1.22387 0.95982 1.01388 0.87458 1.58989 1.07683 1.26959 1.28731 1.22459 0.85408 1.01618 1.01878 1.18486 0.95557 0.90031 0.96004 1.20887 1.05494 0.97693 1.03925 1.17739 0.91697 0.90823 0.91689 1.19645 0.95956 1.21763 1.15570 0.90892 1.26722 0.94452 0.99534 0.97237 1.69923 1.04093 1.35518 1.36087 0.85264 0.78859 0.77434 0.78189 1.18436 1.19177 1.18554 1.20872 1.00333 1.01228 0.97646 1.20533 0.99620 0.95147 0.98325 1.18258 1.00040 0.98740 0.97583 0.96621 0.88599 0.91347 0.94826 0.86537 0.86559 0.93894 0.95663 0.88248 0.91647 0.88003 0.90302 0.87925 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 8.86 127.69 1.13 2.06 16 2 N -0.49 -18.23 4.85 -718.66 -3.49 -21.72 16 3 C 0.05 1.56 5.67 86.47 0.49 2.05 16 4 C 0.05 1.63 5.72 86.46 0.49 2.12 16 5 N -0.51 -19.17 4.88 -719.28 -3.51 -22.68 16 6 C 0.03 1.04 8.96 127.69 1.14 2.18 16 7 C 0.10 4.61 5.78 38.29 0.22 4.83 16 8 C -0.26 -13.35 8.79 22.89 0.20 -13.15 16 9 C 0.08 4.73 5.56 -21.34 -0.12 4.61 16 10 C -0.50 -27.92 9.03 23.36 0.21 -27.71 16 11 H 0.07 3.93 7.90 -2.91 -0.02 3.91 16 12 C 0.03 1.80 5.15 85.21 0.44 2.24 16 13 N -0.83 -44.78 10.96 21.81 0.24 -44.54 16 14 Si 0.98 39.32 29.59 68.60 2.03 41.35 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 C -0.18 -9.92 8.63 22.44 0.19 -9.73 16 19 C -0.12 -5.66 8.97 22.20 0.20 -5.46 16 20 C -0.05 -2.18 5.80 38.81 0.23 -1.95 16 21 H 0.02 0.52 8.12 -2.39 -0.02 0.50 16 22 H 0.10 2.26 8.08 -2.39 -0.02 2.24 16 23 H 0.07 2.15 6.31 -2.39 -0.02 2.14 16 24 H 0.03 1.09 8.13 -2.39 -0.02 1.07 16 25 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 2.38 8.13 -2.38 -0.02 2.36 16 30 H 0.06 2.24 6.12 -2.39 -0.01 2.22 16 31 H 0.10 5.06 6.00 -2.91 -0.02 5.04 16 32 H 0.29 14.00 8.30 -92.70 -0.77 13.23 16 33 H 0.10 5.86 6.18 -2.91 -0.02 5.85 16 34 H 0.11 4.94 6.04 -2.91 -0.02 4.92 16 Total: -1.00 -64.21 270.40 1.19 -63.02 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 1.09 Total: 22.48 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 4.83 Total: -37.91 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -6.76 Total: -88.94 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -64.21 1.19 -63.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215073922.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.335 kcal (2) G-P(sol) polarization free energy of solvation -64.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds