Wall clock time and date at job start Mon Mar 30 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48499 * 109.47072 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46972 * 120.00304 * 3 2 1 6 6 H 1.48498 * 109.47046 * 240.00078 * 3 2 1 7 7 C 1.40206 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 356.94002 * 7 2 1 9 9 C 1.40068 * 120.00010 * 176.94222 * 7 2 1 10 10 S 1.77275 * 127.86612 * 7.45950 * 9 7 2 11 11 N 1.69678 * 95.25214 * 179.91013 * 10 9 7 12 12 C 1.30384 * 107.85714 * 0.36391 * 11 10 9 13 13 C 1.36633 * 118.68931 * 359.72000 * 12 11 10 14 14 Br 1.89098 * 123.03496 * 179.97438 * 13 12 11 15 15 H 0.97003 * 120.00002 * 175.38678 * 1 2 3 16 16 H 1.08007 * 120.65366 * 179.70011 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 1.2764 2.7464 0.0006 5 1 3.0953 1.6964 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0086 -1.2142 -0.0005 8 1 1.4697 -2.1489 0.0490 9 6 3.4078 -1.2150 -0.0652 10 16 4.5023 0.1763 0.0295 11 7 5.9252 -0.7345 -0.1286 12 6 5.5863 -1.9875 -0.2510 13 6 4.2598 -2.3138 -0.2256 14 35 3.6315 -4.0895 -0.3929 15 1 -0.4850 -0.8373 -0.0676 16 1 6.3394 -2.7525 -0.3704 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215133296.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:32 Heat of formation + Delta-G solvation = -12.027003 kcal Electronic energy + Delta-G solvation = -7635.909060 eV Core-core repulsion = 5865.919670 eV Total energy + Delta-G solvation = -1769.989390 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 232.920 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.65033 -36.30985 -32.76690 -31.05842 -27.40075 -24.27929 -21.18745 -20.01730 -18.11529 -16.50756 -15.91462 -15.15814 -14.86699 -14.45824 -13.44846 -13.10501 -12.47201 -12.37033 -11.93643 -11.53433 -11.34449 -10.76271 -10.31064 -10.27961 -9.79719 -9.05407 -7.04269 0.31050 0.59249 1.01651 1.42574 1.45812 1.80290 1.89575 2.01962 2.08844 2.71912 4.29675 4.85501 5.03137 5.10490 5.56846 5.77494 6.05494 6.27629 7.53678 Molecular weight = 232.92amu Principal moments of inertia in cm(-1) A = 0.039024 B = 0.015334 C = 0.011063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.343307 B = 1825.611793 C = 2530.369632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.029 3.971 3 Si 0.959 3.041 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.391 4.391 8 H 0.100 0.900 9 C 0.047 3.953 10 S 0.034 5.966 11 N -0.582 5.582 12 C 0.161 3.839 13 C -0.385 4.385 14 Br -0.053 7.053 15 H 0.299 0.701 16 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -2.802 -0.478 3.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.197 4.197 3 Si 0.775 3.225 4 H -0.132 1.132 5 H -0.130 1.130 6 H -0.134 1.134 7 C -0.429 4.429 8 H 0.118 0.882 9 C -0.078 4.078 10 S 0.175 5.825 11 N -0.403 5.403 12 C -0.029 4.029 13 C -0.479 4.479 14 Br 0.028 6.972 15 H 0.112 0.888 16 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.780 0.075 -0.319 1.810 hybrid contribution -0.508 -3.377 -0.156 3.419 sum 1.272 -3.303 -0.475 3.571 Atomic orbital electron populations 1.70548 1.07930 1.34246 1.25722 1.28388 0.95929 1.05804 0.89588 0.84330 0.78915 0.74229 0.85025 1.13186 1.13034 1.13443 1.20699 0.89893 0.97753 1.34546 0.88220 1.22944 0.96764 0.93670 0.94432 1.84905 0.99080 1.17473 1.80996 1.76847 1.18511 1.06482 1.38474 1.21908 0.94348 0.93959 0.92676 1.21346 0.93898 0.90965 1.41683 1.96203 1.89482 1.13287 1.98262 0.88841 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -34.73 13.65 21.88 0.30 -34.43 13 2 C 0.03 1.33 5.52 85.33 0.47 1.81 13 3 Si 0.96 37.18 24.64 68.60 1.69 38.87 13 4 H -0.21 -7.32 7.11 99.48 0.71 -6.61 13 5 H -0.21 -7.84 6.36 99.34 0.63 -7.21 13 6 H -0.21 -8.14 6.45 99.48 0.64 -7.50 13 7 C -0.39 -18.80 9.53 23.19 0.22 -18.58 13 8 H 0.10 4.88 7.72 -2.91 -0.02 4.86 13 9 C 0.05 2.30 6.20 23.13 0.14 2.45 13 10 S 0.03 1.59 16.66 -56.49 -0.94 0.65 13 11 N -0.58 -27.87 12.06 -61.01 -0.74 -28.61 13 12 C 0.16 7.20 10.98 84.53 0.93 8.13 13 13 C -0.39 -17.83 6.34 22.31 0.14 -17.69 13 14 Br -0.05 -2.11 33.32 -20.37 -0.68 -2.79 13 15 H 0.30 13.10 8.73 -92.71 -0.81 12.29 13 16 H 0.17 6.54 8.06 -2.91 -0.02 6.52 13 Total: -1.00 -50.50 183.31 2.66 -47.84 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 1.13 Total: 2.34 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 1.91 Total: -23.88 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.44 Total: -63.04 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 1.69 Total: 38.87 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -0.94 Total: 0.65 kcal Atomic # 35 Polarization: -2.11 SS G_CDS: -0.68 Total: -2.79 kcal Total: -50.50 2.66 -47.84 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215133296.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.808 kcal (2) G-P(sol) polarization free energy of solvation -50.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds