Wall clock time and date at job start Mon Mar 30 2020 03:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29469 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48493 * 109.47323 * 90.00021 * 3 2 1 5 5 H 1.48501 * 109.46996 * 210.00063 * 3 2 1 6 6 H 1.48499 * 109.47164 * 329.99759 * 3 2 1 7 7 C 1.46460 * 119.99707 * 180.27161 * 2 1 3 8 8 H 1.08003 * 120.00421 * 11.44000 * 7 2 1 9 9 N 1.33713 * 119.99973 * 191.43744 * 7 2 1 10 10 N 1.39862 * 125.52704 * 8.20103 * 9 7 2 11 11 C 1.30246 * 110.15086 * 179.84027 * 10 9 7 12 12 C 1.46479 * 107.94399 * 0.41457 * 11 10 9 13 13 C 1.39601 * 133.85353 * 179.74614 * 12 11 10 14 14 C 1.37869 * 119.66905 * 179.97438 * 13 12 11 15 15 C 1.38640 * 120.40016 * 359.97391 * 14 13 12 16 16 N 1.48016 * 119.71427 * 180.02562 * 15 14 13 17 17 O 1.31703 * 119.99633 * 0.02562 * 16 15 14 18 18 O 1.31695 * 120.00181 * 179.97438 * 16 15 14 19 19 C 1.38104 * 120.57259 * 0.02562 * 15 14 13 20 20 C 1.38340 * 125.52984 * 188.50770 * 9 7 2 21 21 H 0.96999 * 120.00213 * 174.72549 * 1 2 3 22 22 H 1.08010 * 126.02832 * 180.17494 * 11 10 9 23 23 H 1.07999 * 120.16725 * 0.02562 * 13 12 11 24 24 H 1.07996 * 119.80256 * 179.97438 * 14 13 12 25 25 H 1.08001 * 120.04866 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2287 1.6177 0.0000 4 1 2.4762 2.0464 1.4000 5 1 3.5262 1.4401 -0.7001 6 1 1.4262 2.6526 -0.7001 7 6 2.0269 -1.2684 -0.0060 8 1 1.5030 -2.1936 -0.1959 9 7 3.3441 -1.2811 0.2236 10 7 4.1072 -0.1851 0.6392 11 6 5.3552 -0.5327 0.7743 12 6 5.4694 -1.9502 0.4234 13 6 6.5340 -2.8520 0.3753 14 6 6.3061 -4.1572 -0.0059 15 6 5.0280 -4.5774 -0.3404 16 7 4.8005 -5.9823 -0.7471 17 8 5.8099 -6.8272 -0.7895 18 8 3.5886 -6.3876 -1.0656 19 6 3.9652 -3.6965 -0.2975 20 6 4.1742 -2.3787 0.0828 21 1 -0.4850 -0.8365 -0.0772 22 1 6.1640 0.1118 1.0860 23 1 7.5310 -2.5291 0.6363 24 1 7.1282 -4.8565 -0.0443 25 1 2.9731 -4.0328 -0.5602 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215956195.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:17 Heat of formation + Delta-G solvation = 89.015657 kcal Electronic energy + Delta-G solvation = -15398.304095 eV Core-core repulsion = 12574.929754 eV Total energy + Delta-G solvation = -2823.374341 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.34437 -40.22457 -37.95952 -35.92449 -35.49447 -33.93984 -31.71602 -31.27346 -27.51536 -26.61769 -23.92427 -22.95812 -22.58641 -20.42611 -19.37551 -19.12988 -18.04262 -17.44046 -17.05120 -16.34042 -15.93349 -15.66578 -15.55008 -14.80226 -14.45339 -13.81512 -13.41958 -12.90611 -12.69726 -12.49229 -12.37003 -12.31705 -12.13888 -11.90420 -11.88320 -11.09228 -10.79710 -9.92138 -9.81620 -9.61102 -6.38397 -1.83625 -0.06103 0.17526 0.38342 1.28570 1.45771 1.64656 1.75468 1.90117 2.16296 2.47498 2.66597 3.50667 3.55499 3.75604 3.90671 4.11944 4.14932 4.58403 4.69310 4.80214 4.86481 4.96535 5.24399 5.27981 5.63916 5.70872 5.79295 5.95290 6.63577 6.90439 7.60844 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.035993 B = 0.008145 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.750648 B = 3436.740057 C = 4170.690059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.020 3.980 3 Si 1.146 2.854 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.295 1.295 7 C -0.381 4.381 8 H 0.110 0.890 9 N -0.154 5.154 10 N -0.338 5.338 11 C 0.032 3.968 12 C -0.198 4.198 13 C 0.003 3.997 14 C -0.164 4.164 15 C -0.009 4.009 16 N 0.005 4.995 17 O -0.193 6.193 18 O -0.268 6.268 19 C -0.003 4.003 20 C -0.014 4.014 21 H 0.294 0.706 22 H 0.237 0.763 23 H 0.187 0.813 24 H 0.162 0.838 25 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 2.332 1.614 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.202 4.202 3 Si 0.968 3.032 4 H -0.191 1.191 5 H -0.186 1.186 6 H -0.224 1.224 7 C -0.520 4.520 8 H 0.128 0.872 9 N 0.081 4.919 10 N -0.165 5.165 11 C -0.143 4.143 12 C -0.210 4.210 13 C -0.018 4.018 14 C -0.186 4.186 15 C -0.101 4.101 16 N 0.465 4.535 17 O -0.384 6.384 18 O -0.439 6.439 19 C -0.027 4.027 20 C -0.133 4.133 21 H 0.108 0.892 22 H 0.253 0.747 23 H 0.204 0.796 24 H 0.180 0.820 25 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.862 5.337 1.921 10.522 hybrid contribution -0.528 -3.371 -0.430 3.439 sum 8.334 1.966 1.491 8.692 Atomic orbital electron populations 1.70130 1.07896 1.33704 1.28557 1.29715 0.95289 1.05231 0.89970 0.82430 0.73264 0.68071 0.79428 1.19138 1.18555 1.22400 1.22551 0.81163 0.98462 1.49848 0.87238 1.43951 1.05921 1.04430 1.37582 1.76033 1.06477 1.09271 1.24755 1.25379 0.94177 0.92960 1.01787 1.19847 0.92435 0.95531 1.13231 1.20661 0.98832 0.88901 0.93359 1.20523 0.93378 0.98185 1.06511 1.19961 0.97470 0.77478 1.15224 1.50562 1.01742 1.04857 0.96340 1.96151 1.31401 1.51078 1.59740 1.96233 1.04586 1.84947 1.58117 1.19682 0.98571 0.90101 0.94304 1.18377 0.92547 0.89914 1.12462 0.89247 0.74725 0.79592 0.82032 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.01 13.58 23.19 0.31 -36.70 15 2 C 0.02 0.94 5.69 87.18 0.50 1.43 15 3 Si 1.15 45.32 26.47 68.60 1.82 47.13 15 4 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 5 H -0.26 -10.13 6.27 99.48 0.62 -9.51 15 6 H -0.30 -11.29 7.11 99.48 0.71 -10.58 15 7 C -0.38 -18.43 10.69 86.55 0.93 -17.51 15 8 H 0.11 5.42 7.98 -2.91 -0.02 5.39 15 9 N -0.15 -7.01 3.57 -179.88 -0.64 -7.65 15 10 N -0.34 -13.85 7.11 -52.67 -0.37 -14.22 15 11 C 0.03 1.04 12.29 87.08 1.07 2.11 15 12 C -0.20 -6.76 6.36 -20.22 -0.13 -6.89 15 13 C 0.00 0.08 10.11 22.51 0.23 0.31 15 14 C -0.16 -4.98 9.55 22.28 0.21 -4.76 15 15 C -0.01 -0.34 6.89 36.44 0.25 -0.09 15 16 N 0.01 0.21 4.98 -46.31 -0.23 -0.02 15 17 O -0.19 -7.63 19.12 3.51 0.07 -7.56 15 18 O -0.27 -12.03 19.12 3.52 0.07 -11.96 15 19 C 0.00 -0.14 9.48 22.36 0.21 0.08 15 20 C -0.01 -0.60 6.79 38.81 0.26 -0.34 15 21 H 0.29 13.50 8.74 -92.71 -0.81 12.69 15 22 H 0.24 4.79 8.06 -2.91 -0.02 4.77 15 23 H 0.19 2.98 8.06 -2.91 -0.02 2.96 15 24 H 0.16 4.15 7.55 -2.91 -0.02 4.12 15 25 H 0.13 5.41 7.49 -2.91 -0.02 5.39 15 Total: -1.00 -56.53 240.16 5.66 -50.87 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.11 Total: 5.78 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 3.53 Total: -25.66 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.93 Total: -58.59 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.13 Total: -19.52 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.82 Total: 47.13 kcal Total: -56.53 5.66 -50.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215956195.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.885 kcal (2) G-P(sol) polarization free energy of solvation -56.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds