Wall clock time and date at job start Mon Mar 30 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48530 * 110.99967 * 2 1 4 4 C 1.54937 * 103.22382 * 159.72300 * 3 2 1 5 5 C 1.54595 * 102.91973 * 322.58550 * 4 3 2 6 6 H 1.09008 * 110.30835 * 263.03941 * 5 4 3 7 7 C 1.50704 * 110.30764 * 140.87656 * 5 4 3 8 8 H 1.07998 * 119.99888 * 309.39539 * 7 5 4 9 9 C 1.37877 * 119.99899 * 129.39905 * 7 5 4 10 10 N 1.31518 * 119.99989 * 172.98289 * 9 7 5 11 11 Si 1.86804 * 120.00296 * 352.97149 * 9 7 5 12 12 H 1.48503 * 109.46616 * 84.79165 * 11 9 7 13 13 H 1.48489 * 109.47352 * 204.78904 * 11 9 7 14 14 H 1.48496 * 109.47281 * 324.79468 * 11 9 7 15 15 C 1.47897 * 110.99777 * 117.40000 * 2 1 3 16 16 H 1.09006 * 109.91903 * 333.70382 * 15 2 1 17 17 C 1.50695 * 109.92096 * 94.79994 * 15 2 1 18 18 C 1.38673 * 120.42330 * 218.54325 * 17 15 2 19 19 C 1.38623 * 118.42306 * 180.02562 * 18 17 15 20 20 C 1.38228 * 119.16399 * 359.97438 * 19 18 17 21 21 N 1.31854 * 120.76225 * 0.02562 * 20 19 18 22 22 C 1.31889 * 121.72334 * 359.69984 * 21 20 19 23 23 H 1.08998 * 109.46892 * 302.60418 * 1 2 3 24 24 H 1.08994 * 109.47227 * 62.60243 * 1 2 3 25 25 H 1.09002 * 109.47134 * 182.60386 * 1 2 3 26 26 H 1.08994 * 110.66729 * 278.15430 * 3 2 1 27 27 H 1.09000 * 110.66797 * 41.28516 * 3 2 1 28 28 H 1.09000 * 110.71963 * 204.22581 * 4 3 2 29 29 H 1.08994 * 110.87810 * 81.01622 * 4 3 2 30 30 H 0.96999 * 120.00257 * 179.97438 * 10 9 7 31 31 H 1.08000 * 120.78362 * 359.97438 * 18 17 15 32 32 H 1.08006 * 120.42204 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.62112 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.61837 * 180.31184 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2105 0.5227 5 6 3.2982 0.1052 1.5930 6 1 3.2136 0.5484 2.5853 7 6 4.4717 -0.8389 1.5390 8 1 4.7710 -1.2750 0.5974 9 6 5.1630 -1.1459 2.6917 10 7 6.0964 -2.0722 2.6717 11 14 4.7742 -0.2460 4.2819 12 1 3.6287 -0.9071 4.9572 13 1 5.9613 -0.2807 5.1732 14 1 4.4234 1.1648 3.9792 15 6 1.9990 -0.6354 1.2259 16 1 1.2743 -0.5434 2.0349 17 6 2.2937 -2.0899 0.9640 18 6 2.0280 -3.0457 1.9330 19 6 2.3157 -4.3715 1.6483 20 6 2.8535 -4.6947 0.4166 21 7 3.0932 -3.7591 -0.4811 22 6 2.8271 -2.4887 -0.2467 23 1 -0.3633 0.5537 0.8657 24 1 -0.3633 0.4729 -0.9123 25 1 -0.3633 -1.0266 0.0467 26 1 2.0041 1.7976 -1.0095 27 1 1.4237 2.0205 0.6729 28 1 3.8123 2.1351 0.9715 29 1 4.1140 0.8847 -0.2772 30 1 6.5831 -2.2880 3.4825 31 1 1.6077 -2.7637 2.8870 32 1 2.1221 -5.1424 2.3796 33 1 3.0801 -5.7253 0.1869 34 1 3.0324 -1.7511 -1.0084 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220358730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:04 Heat of formation + Delta-G solvation = 44.356269 kcal Electronic energy + Delta-G solvation = -16817.065115 eV Core-core repulsion = 14328.846298 eV Total energy + Delta-G solvation = -2488.218817 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.63680 -37.87878 -33.20426 -31.87403 -31.18980 -30.71512 -27.63080 -25.79876 -23.70495 -22.65241 -22.11985 -20.25231 -19.03327 -17.19095 -16.16198 -15.54628 -15.12303 -14.91668 -14.09823 -13.72975 -13.52983 -12.99435 -12.61975 -12.48666 -12.40731 -12.17259 -11.97784 -11.55150 -11.29967 -10.86442 -10.79205 -10.62289 -10.32855 -9.78009 -9.64637 -9.10520 -8.79356 -8.61403 -8.53903 -7.94395 -7.78614 -6.09186 -4.05860 2.15090 2.27200 3.21243 3.29650 3.31457 4.36230 4.46192 4.81672 5.10627 5.36643 5.45199 5.54615 5.61767 5.65850 5.74242 5.81517 5.86404 5.99378 6.07406 6.11197 6.14409 6.25845 6.50412 6.57075 6.64176 6.70229 6.97086 7.01492 7.05368 7.19546 7.48730 7.59974 7.68650 7.73956 8.50660 8.95451 8.98334 9.52232 11.03015 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.015402 C = 0.010016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.397680 B = 1817.479491 C = 2794.909740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.516 5.516 3 C 0.033 3.967 4 C -0.116 4.116 5 C 0.010 3.990 6 H 0.042 0.958 7 C -0.497 4.497 8 H 0.082 0.918 9 C 0.076 3.924 10 N -0.888 5.888 11 Si 0.869 3.131 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.103 3.897 16 H 0.040 0.960 17 C -0.043 4.043 18 C -0.085 4.085 19 C -0.174 4.174 20 C 0.073 3.927 21 N -0.494 5.494 22 C 0.141 3.859 23 H 0.021 0.979 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.263 0.737 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.949 2.295 -1.670 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.240 5.240 3 C -0.094 4.094 4 C -0.154 4.154 5 C -0.010 4.010 6 H 0.060 0.940 7 C -0.535 4.535 8 H 0.100 0.900 9 C -0.126 4.126 10 N -0.525 5.525 11 Si 0.697 3.303 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.194 1.194 15 C -0.006 4.006 16 H 0.058 0.942 17 C -0.046 4.046 18 C -0.112 4.112 19 C -0.194 4.194 20 C -0.083 4.083 21 N -0.202 5.202 22 C -0.017 4.017 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.156 0.844 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.286 1.651 -2.827 9.847 hybrid contribution -0.704 1.071 2.779 3.060 sum -9.991 2.723 -0.048 10.355 Atomic orbital electron populations 1.22463 0.89151 1.01389 0.99977 1.64520 1.06719 1.14900 1.37856 1.23240 0.96990 0.89223 0.99975 1.22688 0.94023 0.98784 0.99922 1.20078 0.92940 0.93250 0.94701 0.94017 1.20923 1.11136 1.25136 0.96301 0.90002 1.25055 0.94979 0.94428 0.98180 1.69913 1.24098 1.30039 1.28461 0.86992 0.77919 0.81008 0.84406 1.20377 1.21562 1.19352 1.21772 0.97997 0.91588 0.89222 0.94237 1.20142 0.95796 0.94273 0.94347 1.21140 0.98980 0.92888 0.98162 1.21760 1.02638 0.96646 0.98347 1.22328 0.97150 0.98291 0.90508 1.67586 1.16097 1.02050 1.34501 1.22273 0.92259 0.91484 0.95707 0.96076 0.91874 0.91903 0.90981 0.94801 0.92677 0.90726 0.92734 0.86775 0.86460 0.84445 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.40 60.07 0.56 0.84 16 2 N -0.52 -8.99 4.41 -232.17 -1.02 -10.01 16 3 C 0.03 0.54 6.56 -1.90 -0.01 0.53 16 4 C -0.12 -2.22 6.60 -24.87 -0.16 -2.38 16 5 C 0.01 0.22 2.89 -90.42 -0.26 -0.04 16 6 H 0.04 0.94 4.77 -51.92 -0.25 0.70 16 7 C -0.50 -13.06 6.67 -34.44 -0.23 -13.29 16 8 H 0.08 2.40 6.71 -52.49 -0.35 2.05 16 9 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 10 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 11 Si 0.87 20.84 27.07 -169.99 -4.60 16.24 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.17 6.64 56.52 0.38 -5.80 16 15 C 0.10 2.05 2.69 -67.80 -0.18 1.87 16 16 H 0.04 0.76 7.64 -51.93 -0.40 0.36 16 17 C -0.04 -0.91 3.55 -104.48 -0.37 -1.28 16 18 C -0.09 -1.72 9.83 -39.28 -0.39 -2.11 16 19 C -0.17 -3.29 10.11 -39.44 -0.40 -3.69 16 20 C 0.07 1.44 11.18 -17.55 -0.20 1.25 16 21 N -0.49 -10.82 10.36 -13.25 -0.14 -10.96 16 22 C 0.14 3.07 8.71 -17.55 -0.15 2.92 16 23 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.51 7.96 -51.93 -0.41 0.10 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.50 7.85 -51.93 -0.41 1.09 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.14 2.26 8.06 -52.49 -0.42 1.83 16 34 H 0.15 3.24 7.69 -52.48 -0.40 2.83 16 LS Contribution 276.00 15.07 4.16 4.16 Total: -1.00 -29.62 276.00 -7.48 -37.10 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.76 Total: 2.50 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.89 Total: -13.38 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.39 Total: -46.62 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.60 Total: 16.24 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.62 -7.48 -37.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220358730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.455 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds