Wall clock time and date at job start Mon Mar 30 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48530 * 110.99967 * 2 1 4 4 C 1.54937 * 103.22382 * 159.72300 * 3 2 1 5 5 C 1.54595 * 102.91973 * 322.58550 * 4 3 2 6 6 H 1.09008 * 110.30835 * 263.03941 * 5 4 3 7 7 C 1.50704 * 110.30764 * 140.87656 * 5 4 3 8 8 H 1.07998 * 119.99888 * 309.39539 * 7 5 4 9 9 C 1.37877 * 119.99899 * 129.39905 * 7 5 4 10 10 N 1.31518 * 119.99989 * 172.98289 * 9 7 5 11 11 Si 1.86804 * 120.00296 * 352.97149 * 9 7 5 12 12 H 1.48503 * 109.46616 * 84.79165 * 11 9 7 13 13 H 1.48489 * 109.47352 * 204.78904 * 11 9 7 14 14 H 1.48496 * 109.47281 * 324.79468 * 11 9 7 15 15 C 1.47897 * 110.99777 * 117.40000 * 2 1 3 16 16 H 1.09006 * 109.91903 * 333.70382 * 15 2 1 17 17 C 1.50695 * 109.92096 * 94.79994 * 15 2 1 18 18 C 1.38673 * 120.42330 * 218.54325 * 17 15 2 19 19 C 1.38623 * 118.42306 * 180.02562 * 18 17 15 20 20 C 1.38228 * 119.16399 * 359.97438 * 19 18 17 21 21 N 1.31854 * 120.76225 * 0.02562 * 20 19 18 22 22 C 1.31889 * 121.72334 * 359.69984 * 21 20 19 23 23 H 1.08998 * 109.46892 * 302.60418 * 1 2 3 24 24 H 1.08994 * 109.47227 * 62.60243 * 1 2 3 25 25 H 1.09002 * 109.47134 * 182.60386 * 1 2 3 26 26 H 1.08994 * 110.66729 * 278.15430 * 3 2 1 27 27 H 1.09000 * 110.66797 * 41.28516 * 3 2 1 28 28 H 1.09000 * 110.71963 * 204.22581 * 4 3 2 29 29 H 1.08994 * 110.87810 * 81.01622 * 4 3 2 30 30 H 0.96999 * 120.00257 * 179.97438 * 10 9 7 31 31 H 1.08000 * 120.78362 * 359.97438 * 18 17 15 32 32 H 1.08006 * 120.42204 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.62112 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.61837 * 180.31184 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2105 0.5227 5 6 3.2982 0.1052 1.5930 6 1 3.2136 0.5484 2.5853 7 6 4.4717 -0.8389 1.5390 8 1 4.7710 -1.2750 0.5974 9 6 5.1630 -1.1459 2.6917 10 7 6.0964 -2.0722 2.6717 11 14 4.7742 -0.2460 4.2819 12 1 3.6287 -0.9071 4.9572 13 1 5.9613 -0.2807 5.1732 14 1 4.4234 1.1648 3.9792 15 6 1.9990 -0.6354 1.2259 16 1 1.2743 -0.5434 2.0349 17 6 2.2937 -2.0899 0.9640 18 6 2.0280 -3.0457 1.9330 19 6 2.3157 -4.3715 1.6483 20 6 2.8535 -4.6947 0.4166 21 7 3.0932 -3.7591 -0.4811 22 6 2.8271 -2.4887 -0.2467 23 1 -0.3633 0.5537 0.8657 24 1 -0.3633 0.4729 -0.9123 25 1 -0.3633 -1.0266 0.0467 26 1 2.0041 1.7976 -1.0095 27 1 1.4237 2.0205 0.6729 28 1 3.8123 2.1351 0.9715 29 1 4.1140 0.8847 -0.2772 30 1 6.5831 -2.2880 3.4825 31 1 1.6077 -2.7637 2.8870 32 1 2.1221 -5.1424 2.3796 33 1 3.0801 -5.7253 0.1869 34 1 3.0324 -1.7511 -1.0084 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220358730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:03 Heat of formation + Delta-G solvation = 24.868287 kcal Electronic energy + Delta-G solvation = -16817.910177 eV Core-core repulsion = 14328.846298 eV Total energy + Delta-G solvation = -2489.063880 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19107 -39.37307 -35.03665 -33.48759 -32.86627 -32.25441 -29.22604 -27.34632 -25.30217 -24.25124 -23.67964 -21.69446 -20.70859 -19.11361 -17.74202 -17.11383 -16.72615 -16.38918 -15.87415 -15.13597 -15.01806 -14.61715 -14.38449 -14.10176 -13.88137 -13.73501 -13.46765 -13.06112 -12.94988 -12.42375 -12.31563 -12.09723 -11.86743 -11.74356 -11.34175 -10.95425 -10.62521 -10.38824 -10.17796 -9.39031 -9.26566 -8.18958 -6.17929 0.57725 0.67885 1.32391 1.36145 1.43819 2.37201 3.09179 3.12780 3.25497 3.83636 4.06693 4.09630 4.15664 4.24905 4.37178 4.41884 4.45253 4.62734 4.67300 4.73849 4.81655 4.89730 5.00876 5.04971 5.11666 5.17066 5.39943 5.41516 5.50901 5.62753 5.73931 6.02931 6.15615 6.29615 6.45453 6.85463 7.35265 7.42485 8.96951 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.015402 C = 0.010016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.397680 B = 1817.479491 C = 2794.909740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.043 3.957 4 C -0.115 4.115 5 C 0.001 3.999 6 H 0.043 0.957 7 C -0.479 4.479 8 H 0.037 0.963 9 C 0.018 3.982 10 N -0.943 5.943 11 Si 0.927 3.073 12 H -0.266 1.266 13 H -0.297 1.297 14 H -0.249 1.249 15 C 0.110 3.890 16 H 0.052 0.948 17 C -0.056 4.056 18 C -0.101 4.101 19 C -0.172 4.172 20 C 0.060 3.940 21 N -0.519 5.519 22 C 0.123 3.877 23 H 0.034 0.966 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.260 0.740 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 3.414 -0.766 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.254 5.254 3 C -0.084 4.084 4 C -0.154 4.154 5 C -0.019 4.019 6 H 0.061 0.939 7 C -0.518 4.518 8 H 0.056 0.944 9 C -0.179 4.179 10 N -0.584 5.584 11 Si 0.753 3.247 12 H -0.191 1.191 13 H -0.224 1.224 14 H -0.173 1.173 15 C 0.001 3.999 16 H 0.070 0.930 17 C -0.059 4.059 18 C -0.127 4.127 19 C -0.192 4.192 20 C -0.096 4.096 21 N -0.229 5.229 22 C -0.035 4.035 23 H 0.053 0.947 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.532 2.802 -1.942 12.025 hybrid contribution -0.020 0.661 2.385 2.475 sum -11.551 3.464 0.443 12.067 Atomic orbital electron populations 1.22512 0.86928 1.01705 1.01643 1.64497 1.08843 1.15554 1.36520 1.23229 0.94660 0.88977 1.01537 1.22584 0.96146 0.98116 0.98534 1.20117 0.92402 0.93532 0.95827 0.93912 1.20993 1.11907 1.24626 0.94230 0.94443 1.25799 0.95060 0.95289 1.01729 1.70083 1.26350 1.32672 1.29246 0.86025 0.77666 0.80819 0.80168 1.19114 1.22355 1.17298 1.21535 0.96964 0.90707 0.90719 0.93018 1.20349 0.95931 0.95418 0.94184 1.21525 0.99042 0.93445 0.98709 1.22179 1.01148 0.97203 0.98651 1.22912 0.96764 0.99257 0.90657 1.67544 1.16878 1.02556 1.35895 1.22191 0.93468 0.91551 0.96250 0.94739 0.89776 0.92324 0.88919 0.92702 0.91343 0.92842 0.93134 0.85005 0.82955 0.81496 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.40 127.69 1.20 1.72 16 2 N -0.53 -17.28 4.41 -888.47 -3.92 -21.20 16 3 C 0.04 1.26 6.56 86.65 0.57 1.83 16 4 C -0.12 -4.25 6.60 31.80 0.21 -4.04 16 5 C 0.00 0.03 2.89 -10.66 -0.03 0.00 16 6 H 0.04 1.83 4.77 -2.38 -0.01 1.81 16 7 C -0.48 -25.59 6.67 25.60 0.17 -25.42 16 8 H 0.04 2.30 6.71 -2.91 -0.02 2.28 16 9 C 0.02 1.02 5.47 84.65 0.46 1.48 16 10 N -0.94 -57.81 13.96 21.45 0.30 -57.51 16 11 Si 0.93 42.47 27.07 68.60 1.86 44.33 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 14 H -0.25 -10.50 6.64 99.48 0.66 -9.83 16 15 C 0.11 4.20 2.69 44.31 0.12 4.32 16 16 H 0.05 1.83 7.64 -2.38 -0.02 1.81 16 17 C -0.06 -2.35 3.55 -19.77 -0.07 -2.42 16 18 C -0.10 -3.94 9.83 22.47 0.22 -3.72 16 19 C -0.17 -6.25 10.11 22.36 0.23 -6.03 16 20 C 0.06 2.33 11.18 84.69 0.95 3.28 16 21 N -0.52 -23.15 10.36 -195.84 -2.03 -25.18 16 22 C 0.12 5.48 8.71 84.67 0.74 6.21 16 23 H 0.03 0.79 8.00 -2.39 -0.02 0.77 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.05 1.41 7.96 -2.39 -0.02 1.39 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 2.16 7.85 -2.39 -0.02 2.15 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 32 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 33 H 0.17 5.24 8.06 -2.91 -0.02 5.22 16 34 H 0.14 6.24 7.69 -2.91 -0.02 6.22 16 Total: -1.00 -65.38 276.00 2.00 -63.38 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.03 Total: 18.96 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.76 Total: -22.79 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -5.65 Total: -103.89 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.86 Total: 44.33 kcal Total: -65.38 2.00 -63.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220358730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.247 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds