Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48537 * 111.00095 * 2 1 4 4 C 1.54936 * 103.37541 * 159.80510 * 3 2 1 5 5 C 1.54592 * 102.92257 * 322.50033 * 4 3 2 6 6 H 1.09001 * 110.30518 * 140.87869 * 5 4 3 7 7 C 1.50703 * 110.31149 * 262.94306 * 5 4 3 8 8 H 1.07998 * 119.99494 * 118.54741 * 7 5 4 9 9 C 1.37880 * 119.99803 * 298.54807 * 7 5 4 10 10 N 1.31515 * 119.99413 * 179.97438 * 9 7 5 11 11 Si 1.86794 * 120.00173 * 359.97438 * 9 7 5 12 12 H 1.48502 * 109.47107 * 90.00234 * 11 9 7 13 13 H 1.48504 * 109.47263 * 209.99915 * 11 9 7 14 14 H 1.48495 * 109.47448 * 330.00033 * 11 9 7 15 15 C 1.48321 * 111.19902 * 117.25383 * 2 1 3 16 16 H 1.09001 * 109.88222 * 333.59537 * 15 2 1 17 17 C 1.50708 * 109.89796 * 94.84822 * 15 2 1 18 18 C 1.38669 * 120.41858 * 217.65147 * 17 15 2 19 19 C 1.38630 * 118.42196 * 180.02562 * 18 17 15 20 20 C 1.38220 * 119.15768 * 359.97438 * 19 18 17 21 21 N 1.31860 * 120.76558 * 359.97438 * 20 19 18 22 22 C 1.31882 * 121.72404 * 359.70957 * 21 20 19 23 23 H 1.09003 * 109.47400 * 59.87349 * 1 2 3 24 24 H 1.08998 * 109.47487 * 179.87409 * 1 2 3 25 25 H 1.09002 * 109.47354 * 299.87133 * 1 2 3 26 26 H 1.09002 * 110.66696 * 41.28516 * 3 2 1 27 27 H 1.09001 * 110.66368 * 278.32355 * 3 2 1 28 28 H 1.08998 * 110.72698 * 80.86591 * 4 3 2 29 29 H 1.09007 * 110.72195 * 204.14011 * 4 3 2 30 30 H 0.97004 * 119.99657 * 179.97438 * 10 9 7 31 31 H 1.08003 * 120.79177 * 359.97438 * 18 17 15 32 32 H 1.07995 * 120.41941 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.62106 * 180.02562 * 20 19 18 34 34 H 1.08001 * 119.61476 * 180.31319 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4504 1.2143 0.5204 5 6 3.3036 0.1106 1.5928 6 1 4.1537 -0.5706 1.5533 7 6 3.1904 0.7253 2.9641 8 1 2.2999 0.5678 3.5545 9 6 4.2236 1.4888 3.4647 10 7 4.1245 2.0257 4.6612 11 14 5.7640 1.7606 2.4436 12 1 5.5974 2.9790 1.6111 13 1 6.9314 1.9330 3.3451 14 1 5.9877 0.5862 1.5630 15 6 2.0052 -0.6332 1.2293 16 1 1.2833 -0.5383 2.0405 17 6 2.3024 -2.0877 0.9693 18 6 2.0588 -3.0398 1.9476 19 6 2.3479 -4.3658 1.6644 20 6 2.8652 -4.6923 0.4249 21 7 3.0832 -3.7602 -0.4819 22 6 2.8143 -2.4901 -0.2494 23 1 -0.3634 0.5158 -0.8889 24 1 -0.3634 -1.0276 -0.0023 25 1 -0.3634 0.5118 0.8911 26 1 1.4237 2.0205 0.6729 27 1 2.0013 1.7987 -1.0091 28 1 4.1120 0.8873 -0.2818 29 1 3.8126 2.1404 0.9669 30 1 4.8515 2.5626 5.0136 31 1 1.6542 -2.7552 2.9076 32 1 2.1711 -5.1337 2.4028 33 1 3.0927 -5.7230 0.1961 34 1 3.0016 -1.7555 -1.0186 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220358793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = 42.766184 kcal Electronic energy + Delta-G solvation = -16461.539695 eV Core-core repulsion = 13973.251927 eV Total energy + Delta-G solvation = -2488.287769 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.96635 -38.11254 -33.19997 -32.40759 -31.27863 -31.03334 -27.80579 -25.93975 -23.66707 -23.15284 -22.26686 -20.51668 -19.32758 -16.87333 -16.55766 -15.86043 -15.38516 -15.11151 -14.05799 -13.85275 -13.70955 -13.32707 -12.99843 -12.83258 -12.62101 -12.43914 -11.91327 -11.46548 -11.28403 -10.88171 -10.71605 -10.62972 -10.33401 -10.00149 -9.72363 -9.31378 -9.16423 -9.03235 -8.66254 -8.37333 -7.98020 -6.16332 -4.16537 1.54956 1.70257 3.22431 3.34151 3.37495 4.21071 4.34572 4.49218 4.84471 5.10396 5.21475 5.37389 5.48940 5.50610 5.53916 5.55161 5.76674 5.88921 5.97447 6.07436 6.11052 6.13673 6.25606 6.32784 6.48798 6.66649 6.71863 6.75880 6.93664 7.13562 7.25793 7.32298 7.54538 7.71171 8.37590 8.40315 8.84309 9.45301 10.96146 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.009797 C = 0.008490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.651533 B = 2857.431705 C = 3297.294487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.522 5.522 3 C 0.047 3.953 4 C -0.135 4.135 5 C 0.020 3.980 6 H 0.036 0.964 7 C -0.514 4.514 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.293 1.293 14 H -0.262 1.262 15 C 0.117 3.883 16 H 0.066 0.934 17 C -0.098 4.098 18 C -0.074 4.074 19 C -0.178 4.178 20 C 0.077 3.923 21 N -0.494 5.494 22 C 0.119 3.881 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.028 0.972 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.265 0.735 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -6.953 -7.733 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.246 5.246 3 C -0.080 4.080 4 C -0.173 4.173 5 C 0.001 3.999 6 H 0.054 0.946 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.129 4.129 10 N -0.535 5.535 11 Si 0.707 3.293 12 H -0.202 1.202 13 H -0.220 1.220 14 H -0.187 1.187 15 C 0.008 3.992 16 H 0.084 0.916 17 C -0.100 4.100 18 C -0.101 4.101 19 C -0.197 4.197 20 C -0.080 4.080 21 N -0.203 5.203 22 C -0.038 4.038 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.004 -7.367 -8.876 12.210 hybrid contribution 0.174 0.927 1.277 1.587 sum -3.830 -6.440 -7.599 10.672 Atomic orbital electron populations 1.22430 0.88859 1.01268 1.00368 1.64667 1.07226 1.15601 1.37108 1.23047 0.96272 0.89160 0.99560 1.22955 0.95007 1.00902 0.98421 1.19992 0.92143 0.92794 0.95014 0.94558 1.21003 1.04336 1.31224 0.98615 0.90916 1.24974 0.98128 0.95017 0.94811 1.69895 1.33039 1.33797 1.16803 0.86932 0.82814 0.79354 0.80183 1.20175 1.22021 1.18656 1.21473 0.98658 0.88823 0.90219 0.91632 1.20951 0.98017 0.96397 0.94670 1.21524 0.96902 0.92448 0.99184 1.22010 1.02194 0.96948 0.98591 1.22595 0.96643 0.98676 0.90094 1.67697 1.16325 1.01991 1.34251 1.22635 0.93415 0.91878 0.95873 0.91887 0.92174 0.95320 0.93319 0.91323 0.93099 0.91093 0.92548 0.85015 0.85434 0.83631 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.43 60.06 0.57 0.86 16 2 N -0.52 -9.13 4.39 -231.82 -1.02 -10.15 16 3 C 0.05 0.84 6.55 -1.90 -0.01 0.83 16 4 C -0.13 -2.79 5.07 -24.87 -0.13 -2.92 16 5 C 0.02 0.45 2.07 -90.42 -0.19 0.27 16 6 H 0.04 0.88 6.81 -51.93 -0.35 0.53 16 7 C -0.51 -13.78 9.12 -34.44 -0.31 -14.10 16 8 H 0.07 2.11 7.60 -52.49 -0.40 1.71 16 9 C 0.07 2.03 5.36 -17.82 -0.10 1.94 16 10 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 11 Si 0.88 21.31 24.64 -169.99 -4.19 17.12 16 12 H -0.28 -6.44 6.89 56.52 0.39 -6.05 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.26 -6.20 6.56 56.52 0.37 -5.83 16 15 C 0.12 2.28 2.36 -67.56 -0.16 2.12 16 16 H 0.07 1.35 6.88 -51.93 -0.36 1.00 16 17 C -0.10 -1.78 4.77 -104.48 -0.50 -2.28 16 18 C -0.07 -1.22 9.84 -39.28 -0.39 -1.61 16 19 C -0.18 -2.53 10.11 -39.44 -0.40 -2.93 16 20 C 0.08 1.13 11.18 -17.55 -0.20 0.94 16 21 N -0.49 -8.54 10.36 -13.25 -0.14 -8.68 16 22 C 0.12 2.13 10.50 -17.55 -0.18 1.94 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.43 8.00 -51.93 -0.42 0.02 16 26 H 0.05 0.91 8.00 -51.93 -0.42 0.49 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.58 5.04 -51.92 -0.26 1.32 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.16 2.78 7.66 -52.49 -0.40 2.38 16 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -29.48 275.30 -7.16 -36.63 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.74 Total: 1.78 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.99 Total: -14.94 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.38 Total: -44.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.19 Total: 17.12 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.48 -7.16 -36.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220358793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.399 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds