Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48537 * 111.00095 * 2 1 4 4 C 1.54936 * 103.37541 * 159.80510 * 3 2 1 5 5 C 1.54592 * 102.92257 * 322.50033 * 4 3 2 6 6 H 1.09001 * 110.30518 * 140.87869 * 5 4 3 7 7 C 1.50703 * 110.31149 * 262.94306 * 5 4 3 8 8 H 1.07998 * 119.99494 * 118.54741 * 7 5 4 9 9 C 1.37880 * 119.99803 * 298.54807 * 7 5 4 10 10 N 1.31515 * 119.99413 * 179.97438 * 9 7 5 11 11 Si 1.86794 * 120.00173 * 359.97438 * 9 7 5 12 12 H 1.48502 * 109.47107 * 90.00234 * 11 9 7 13 13 H 1.48504 * 109.47263 * 209.99915 * 11 9 7 14 14 H 1.48495 * 109.47448 * 330.00033 * 11 9 7 15 15 C 1.48321 * 111.19902 * 117.25383 * 2 1 3 16 16 H 1.09001 * 109.88222 * 333.59537 * 15 2 1 17 17 C 1.50708 * 109.89796 * 94.84822 * 15 2 1 18 18 C 1.38669 * 120.41858 * 217.65147 * 17 15 2 19 19 C 1.38630 * 118.42196 * 180.02562 * 18 17 15 20 20 C 1.38220 * 119.15768 * 359.97438 * 19 18 17 21 21 N 1.31860 * 120.76558 * 359.97438 * 20 19 18 22 22 C 1.31882 * 121.72404 * 359.70957 * 21 20 19 23 23 H 1.09003 * 109.47400 * 59.87349 * 1 2 3 24 24 H 1.08998 * 109.47487 * 179.87409 * 1 2 3 25 25 H 1.09002 * 109.47354 * 299.87133 * 1 2 3 26 26 H 1.09002 * 110.66696 * 41.28516 * 3 2 1 27 27 H 1.09001 * 110.66368 * 278.32355 * 3 2 1 28 28 H 1.08998 * 110.72698 * 80.86591 * 4 3 2 29 29 H 1.09007 * 110.72195 * 204.14011 * 4 3 2 30 30 H 0.97004 * 119.99657 * 179.97438 * 10 9 7 31 31 H 1.08003 * 120.79177 * 359.97438 * 18 17 15 32 32 H 1.07995 * 120.41941 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.62106 * 180.02562 * 20 19 18 34 34 H 1.08001 * 119.61476 * 180.31319 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4504 1.2143 0.5204 5 6 3.3036 0.1106 1.5928 6 1 4.1537 -0.5706 1.5533 7 6 3.1904 0.7253 2.9641 8 1 2.2999 0.5678 3.5545 9 6 4.2236 1.4888 3.4647 10 7 4.1245 2.0257 4.6612 11 14 5.7640 1.7606 2.4436 12 1 5.5974 2.9790 1.6111 13 1 6.9314 1.9330 3.3451 14 1 5.9877 0.5862 1.5630 15 6 2.0052 -0.6332 1.2293 16 1 1.2833 -0.5383 2.0405 17 6 2.3024 -2.0877 0.9693 18 6 2.0588 -3.0398 1.9476 19 6 2.3479 -4.3658 1.6644 20 6 2.8652 -4.6923 0.4249 21 7 3.0832 -3.7602 -0.4819 22 6 2.8143 -2.4901 -0.2494 23 1 -0.3634 0.5158 -0.8889 24 1 -0.3634 -1.0276 -0.0023 25 1 -0.3634 0.5118 0.8911 26 1 1.4237 2.0205 0.6729 27 1 2.0013 1.7987 -1.0091 28 1 4.1120 0.8873 -0.2818 29 1 3.8126 2.1404 0.9669 30 1 4.8515 2.5626 5.0136 31 1 1.6542 -2.7552 2.9076 32 1 2.1711 -5.1337 2.4028 33 1 3.0927 -5.7230 0.1961 34 1 3.0016 -1.7555 -1.0186 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220358793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = 23.029814 kcal Electronic energy + Delta-G solvation = -16462.395528 eV Core-core repulsion = 13973.251927 eV Total energy + Delta-G solvation = -2489.143602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30266 -39.56652 -35.12716 -33.73860 -32.91611 -32.43214 -29.39902 -27.49282 -25.31116 -24.43422 -23.67674 -22.09171 -20.93967 -18.73869 -17.94787 -17.29199 -16.79987 -16.77335 -15.62410 -15.30522 -15.17700 -14.64121 -14.56443 -14.48693 -14.07340 -13.88293 -13.31211 -13.06752 -12.88305 -12.55258 -12.35510 -12.19396 -11.93146 -11.76386 -11.54468 -11.06356 -10.78847 -10.59194 -10.35367 -9.71454 -9.40990 -8.33275 -6.37089 0.30494 0.42555 1.29515 1.35311 1.45140 2.30507 2.92718 3.00609 3.11776 3.65781 3.91369 3.98577 4.07972 4.16600 4.24233 4.29963 4.32621 4.51231 4.63231 4.67785 4.73319 4.79570 4.96775 4.98316 5.02772 5.17368 5.22440 5.28308 5.43336 5.47357 5.60739 5.85132 5.94402 6.15805 6.25836 6.67794 7.12895 7.28053 8.82692 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.009797 C = 0.008490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.651533 B = 2857.431705 C = 3297.294487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.051 3.949 4 C -0.136 4.136 5 C 0.018 3.982 6 H 0.023 0.977 7 C -0.511 4.511 8 H 0.033 0.967 9 C 0.018 3.982 10 N -0.946 5.946 11 Si 0.938 3.062 12 H -0.258 1.258 13 H -0.296 1.296 14 H -0.251 1.251 15 C 0.127 3.873 16 H 0.042 0.958 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.166 4.166 20 C 0.079 3.921 21 N -0.510 5.510 22 C 0.111 3.889 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.019 0.981 26 H 0.035 0.965 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.266 0.734 31 H 0.130 0.870 32 H 0.164 0.836 33 H 0.185 0.815 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 -8.367 -9.853 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.240 5.240 3 C -0.076 4.076 4 C -0.174 4.174 5 C -0.001 4.001 6 H 0.041 0.959 7 C -0.549 4.549 8 H 0.052 0.948 9 C -0.179 4.179 10 N -0.586 5.586 11 Si 0.763 3.237 12 H -0.183 1.183 13 H -0.223 1.223 14 H -0.174 1.174 15 C 0.018 3.982 16 H 0.060 0.940 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.186 4.186 20 C -0.078 4.078 21 N -0.219 5.219 22 C -0.045 4.045 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.182 0.818 33 H 0.201 0.799 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.790 -8.783 -11.020 14.592 hybrid contribution 0.010 1.252 2.007 2.365 sum -3.779 -7.531 -9.013 12.338 Atomic orbital electron populations 1.22501 0.87095 1.02040 1.01178 1.64750 1.08836 1.14983 1.35433 1.23066 0.94198 0.89391 1.00963 1.22885 0.97324 0.99116 0.98071 1.19883 0.93432 0.93420 0.93402 0.95935 1.21229 1.02689 1.30709 1.00300 0.94839 1.25781 1.01432 0.94930 0.95796 1.70037 1.34315 1.35388 1.18834 0.85970 0.78586 0.80248 0.78865 1.18329 1.22338 1.17447 1.21180 0.96507 0.90032 0.90510 0.93951 1.20843 0.99890 0.95630 0.95681 1.21729 0.97296 0.93619 0.98942 1.22377 1.00401 0.96546 0.99258 1.23270 0.95032 0.99860 0.89610 1.67736 1.16903 1.01993 1.35288 1.22574 0.93904 0.92426 0.95591 0.89262 0.91499 0.96215 0.94678 0.87954 0.91212 0.92731 0.92505 0.85158 0.81807 0.79852 0.82584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.43 127.69 1.20 1.78 16 2 N -0.52 -17.41 4.39 -887.35 -3.90 -21.30 16 3 C 0.05 1.76 6.55 86.65 0.57 2.33 16 4 C -0.14 -5.47 5.07 31.80 0.16 -5.31 16 5 C 0.02 0.83 2.07 -10.66 -0.02 0.80 16 6 H 0.02 1.09 6.81 -2.39 -0.02 1.08 16 7 C -0.51 -28.44 9.12 25.60 0.23 -28.21 16 8 H 0.03 2.07 7.60 -2.91 -0.02 2.04 16 9 C 0.02 1.04 5.36 84.66 0.45 1.49 16 10 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 11 Si 0.94 44.17 24.64 68.60 1.69 45.86 16 12 H -0.26 -11.38 6.89 99.48 0.69 -10.69 16 13 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.25 -11.24 6.56 99.48 0.65 -10.59 16 15 C 0.13 4.99 2.36 44.23 0.10 5.09 16 16 H 0.04 1.83 6.88 -2.39 -0.02 1.81 16 17 C -0.12 -4.22 4.77 -19.77 -0.09 -4.32 16 18 C -0.09 -2.87 9.84 22.47 0.22 -2.65 16 19 C -0.17 -4.27 10.11 22.36 0.23 -4.04 16 20 C 0.08 2.06 11.18 84.68 0.95 3.01 16 21 N -0.51 -16.45 10.36 -195.85 -2.03 -18.48 16 22 C 0.11 3.83 10.50 84.67 0.89 4.72 16 23 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.02 0.58 8.00 -2.39 -0.02 0.57 16 26 H 0.03 1.29 8.00 -2.39 -0.02 1.27 16 27 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.05 2.37 5.04 -2.38 -0.01 2.36 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.16 5.28 7.66 -2.91 -0.02 5.26 16 Total: -1.00 -65.15 275.30 1.96 -63.19 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.00 Total: 13.93 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.89 Total: -25.31 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -5.63 Total: -97.68 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.69 Total: 45.86 kcal Total: -65.15 1.96 -63.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220358793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.222 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds