Wall clock time and date at job start Mon Mar 30 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 108.57850 * 2 1 4 4 C 1.51000 * 108.63020 * 242.03197 * 2 1 3 5 5 N 1.47283 * 110.23068 * 174.82736 * 4 2 1 6 6 C 1.36854 * 121.14696 * 262.80864 * 5 4 2 7 7 H 1.07997 * 120.00364 * 359.97438 * 6 5 4 8 8 C 1.38793 * 119.99915 * 179.97438 * 6 5 4 9 9 N 1.31601 * 119.99570 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00380 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47027 * 59.99617 * 10 8 6 12 12 H 1.48493 * 109.47431 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47029 * 300.00122 * 10 8 6 14 14 C 1.39359 * 117.70096 * 82.78990 * 5 4 2 15 15 C 1.38974 * 120.65323 * 113.16798 * 14 5 4 16 16 C 1.38129 * 119.62255 * 181.85557 * 15 14 5 17 17 C 1.38350 * 120.22130 * 0.36339 * 16 15 14 18 18 C 1.38461 * 120.23274 * 359.29897 * 17 16 15 19 19 C 1.37829 * 119.71704 * 0.10458 * 18 17 16 20 20 C 1.51769 * 120.21377 * 183.26148 * 19 18 17 21 21 N 1.46166 * 108.62596 * 117.82639 * 2 1 3 22 22 H 1.08991 * 109.47204 * 177.96353 * 1 2 3 23 23 H 1.08997 * 109.47113 * 297.97046 * 1 2 3 24 24 H 1.09003 * 109.46941 * 57.96490 * 1 2 3 25 25 H 1.09007 * 109.34200 * 54.59299 * 4 2 1 26 26 H 1.09002 * 109.22101 * 294.98302 * 4 2 1 27 27 H 0.97001 * 119.99436 * 179.97438 * 9 8 6 28 28 H 1.07997 * 120.19022 * 1.83553 * 15 14 5 29 29 H 1.08000 * 119.88781 * 180.38257 * 16 15 14 30 30 H 1.08003 * 119.88256 * 179.32983 * 17 16 15 31 31 H 1.08002 * 120.13897 * 179.81956 * 18 17 16 32 32 H 1.09002 * 109.65992 * 126.73102 * 20 19 18 33 33 H 1.08996 * 109.60066 * 6.47457 * 20 19 18 34 34 H 1.00901 * 111.00348 * 317.24524 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8773 1.0333 0.0000 4 6 2.0124 -0.6711 -1.2638 5 7 3.4793 -0.5811 -1.3601 6 6 4.0811 0.3958 -2.1060 7 1 3.4788 1.1178 -2.6372 8 6 5.4657 0.4586 -2.1797 9 7 6.1997 -0.4209 -1.5320 10 14 6.2873 1.7925 -3.1972 11 1 5.8949 3.1259 -2.6746 12 1 7.7621 1.6416 -3.1129 13 1 5.8578 1.6699 -4.6134 14 6 4.2332 -1.5250 -0.6652 15 6 4.9948 -2.4656 -1.3482 16 6 5.7036 -3.4155 -0.6388 17 6 5.6501 -3.4357 0.7435 18 6 4.8974 -2.4950 1.4259 19 6 4.1985 -1.5380 0.7221 20 6 3.4298 -0.4570 1.4596 21 7 1.9968 -0.6466 1.2249 22 1 -0.3633 -1.0269 -0.0365 23 1 -0.3633 0.4820 0.9076 24 1 -0.3633 0.5451 -0.8712 25 1 1.5630 -0.1804 -2.1272 26 1 1.7151 -1.7196 -1.2492 27 1 7.1673 -0.3772 -1.5838 28 1 5.0321 -2.4542 -2.4275 29 1 6.3018 -4.1447 -1.1650 30 1 6.1979 -4.1876 1.2923 31 1 4.8544 -2.5140 2.5049 32 1 3.7324 0.5236 1.0923 33 1 3.6362 -0.5255 2.5276 34 1 1.4569 -0.3441 2.0219 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230231612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:06 Heat of formation + Delta-G solvation = 42.819993 kcal Electronic energy + Delta-G solvation = -16966.555253 eV Core-core repulsion = 14478.269818 eV Total energy + Delta-G solvation = -2488.285435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57837 -37.87370 -36.38794 -33.45178 -33.01419 -30.81581 -29.57494 -27.54472 -25.82412 -24.76291 -22.85048 -21.32514 -21.14067 -19.24496 -17.32660 -17.08352 -16.45398 -15.92068 -15.75787 -15.61748 -15.30059 -14.72438 -14.19593 -13.76065 -13.45573 -13.29358 -12.92352 -12.81892 -12.69322 -12.47624 -12.45198 -12.19734 -12.01374 -11.80460 -11.56268 -11.44923 -10.97307 -9.63391 -9.26008 -9.03178 -8.70686 -7.41204 -5.40397 1.11847 1.27428 1.42930 1.45231 1.50945 2.42277 3.24231 3.31019 3.47790 3.65499 4.19953 4.23889 4.37580 4.48947 4.53570 4.63270 4.69487 4.74910 4.82632 4.93946 5.06076 5.10354 5.16480 5.24844 5.37553 5.42962 5.59290 5.79738 6.01854 6.15462 6.17280 6.22940 6.50638 6.66839 6.77476 7.15952 7.81470 8.14671 9.07845 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.013930 C = 0.009413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.495841 B = 2009.509980 C = 2973.832069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 H 0.011 0.989 4 C 0.146 3.854 5 N -0.562 5.562 6 C -0.262 4.262 7 H 0.087 0.913 8 C -0.060 4.060 9 N -0.896 5.896 10 Si 0.975 3.025 11 H -0.280 1.280 12 H -0.296 1.296 13 H -0.277 1.277 14 C 0.246 3.754 15 C -0.070 4.070 16 C -0.142 4.142 17 C -0.169 4.169 18 C -0.126 4.126 19 C -0.137 4.137 20 C 0.130 3.870 21 N -0.684 5.684 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.247 0.753 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.008 0.992 33 H 0.081 0.919 34 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 -0.951 4.698 8.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.038 4.038 3 H 0.029 0.971 4 C 0.022 3.978 5 N -0.272 5.272 6 C -0.390 4.390 7 H 0.105 0.895 8 C -0.256 4.256 9 N -0.539 5.539 10 Si 0.803 3.197 11 H -0.206 1.206 12 H -0.222 1.222 13 H -0.203 1.203 14 C 0.147 3.853 15 C -0.094 4.094 16 C -0.162 4.162 17 C -0.189 4.189 18 C -0.145 4.145 19 C -0.141 4.141 20 C 0.001 3.999 21 N -0.318 5.318 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.026 0.974 33 H 0.100 0.900 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.330 -1.381 4.290 8.604 hybrid contribution 1.112 1.710 -0.616 2.130 sum -6.218 0.329 3.674 7.230 Atomic orbital electron populations 1.21799 0.91892 1.02864 1.02746 1.21416 0.96297 0.94520 0.91536 0.97129 1.21037 0.81497 0.99094 0.96211 1.42188 1.02024 1.30131 1.52902 1.19687 0.90419 1.05199 1.23732 0.89505 1.25649 0.96992 1.01092 1.01878 1.70279 1.04217 1.35273 1.44114 0.85207 0.76919 0.78919 0.78619 1.20582 1.22224 1.20309 1.16877 0.91429 0.87611 0.89429 1.20650 0.98977 0.92904 0.96876 1.20763 1.00957 0.99645 0.94835 1.20832 1.03012 1.01258 0.93774 1.20678 0.99034 0.96014 0.98819 1.20123 1.01968 0.98837 0.93190 1.20534 0.87309 0.94049 0.97973 1.59118 1.03321 1.64203 1.05158 0.91569 0.91230 0.91281 0.91102 0.93554 0.94193 0.91522 0.87432 0.85769 0.85895 0.97354 0.90024 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.21 71.98 0.66 -2.65 16 2 C 0.07 2.56 2.81 44.40 0.12 2.68 16 3 H 0.01 0.42 7.85 -2.38 -0.02 0.40 16 4 C 0.15 5.97 5.30 85.58 0.45 6.42 16 5 N -0.56 -28.32 2.37 -513.81 -1.22 -29.54 16 6 C -0.26 -14.09 9.83 84.04 0.83 -13.26 16 7 H 0.09 4.43 7.82 -2.91 -0.02 4.41 16 8 C -0.06 -3.31 5.38 84.86 0.46 -2.85 16 9 N -0.90 -51.59 8.74 21.65 0.19 -51.40 16 10 Si 0.98 44.74 29.55 68.60 2.03 46.77 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 C 0.25 12.57 3.55 38.25 0.14 12.71 16 15 C -0.07 -3.60 7.02 22.42 0.16 -3.44 16 16 C -0.14 -6.45 10.03 22.27 0.22 -6.23 16 17 C -0.17 -6.99 10.05 22.35 0.22 -6.77 16 18 C -0.13 -5.27 9.69 22.23 0.22 -5.05 16 19 C -0.14 -6.34 5.49 -19.49 -0.11 -6.44 16 20 C 0.13 5.23 6.07 85.99 0.52 5.75 16 21 N -0.68 -23.42 6.22 -499.86 -3.11 -26.52 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.07 1.42 8.03 -2.39 -0.02 1.40 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.07 2.68 8.01 -2.38 -0.02 2.67 16 26 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 27 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.07 3.69 8.05 -2.91 -0.02 3.67 16 29 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.12 4.31 7.99 -2.91 -0.02 4.29 16 32 H 0.01 0.39 7.70 -2.39 -0.02 0.37 16 33 H 0.08 2.78 7.94 -2.39 -0.02 2.76 16 34 H 0.35 9.55 8.50 -89.69 -0.76 8.79 16 Total: -1.00 -62.78 273.30 2.11 -60.68 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.32 Total: 19.14 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 3.90 Total: -19.12 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.14 Total: -107.46 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -62.78 2.11 -60.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230231612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.496 kcal (2) G-P(sol) polarization free energy of solvation -62.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds