Wall clock time and date at job start Mon Mar 30 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 108.57157 * 2 1 4 4 C 1.51018 * 108.62118 * 117.94765 * 2 1 3 5 5 N 1.47370 * 110.08769 * 184.74657 * 4 2 1 6 6 C 1.36848 * 121.15514 * 97.66417 * 5 4 2 7 7 H 1.08003 * 119.99893 * 359.97438 * 6 5 4 8 8 C 1.38795 * 119.99794 * 179.97438 * 6 5 4 9 9 N 1.31588 * 120.00128 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99693 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47205 * 60.00013 * 10 8 6 12 12 H 1.48501 * 109.46956 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47184 * 299.99747 * 10 8 6 14 14 C 1.39232 * 117.68785 * 277.64571 * 5 4 2 15 15 C 1.39081 * 120.48324 * 247.63858 * 14 5 4 16 16 C 1.38096 * 119.67565 * 177.69247 * 15 14 5 17 17 C 1.38353 * 120.29927 * 0.05971 * 16 15 14 18 18 C 1.38487 * 120.14854 * 0.66278 * 17 16 15 19 19 C 1.37727 * 119.69516 * 359.83662 * 18 17 16 20 20 C 1.51878 * 120.35745 * 178.65823 * 19 18 17 21 21 N 1.46170 * 108.48902 * 242.16071 * 2 1 3 22 22 H 1.08999 * 109.47490 * 302.04629 * 1 2 3 23 23 H 1.09001 * 109.46985 * 62.05071 * 1 2 3 24 24 H 1.09000 * 109.47137 * 182.04818 * 1 2 3 25 25 H 1.09001 * 109.36022 * 64.55989 * 4 2 1 26 26 H 1.08998 * 109.37007 * 304.93814 * 4 2 1 27 27 H 0.97002 * 120.00312 * 180.02562 * 9 8 6 28 28 H 1.07995 * 120.16356 * 357.71883 * 15 14 5 29 29 H 1.08003 * 119.84995 * 180.02562 * 16 15 14 30 30 H 1.07999 * 119.92668 * 180.66124 * 17 16 15 31 31 H 1.08005 * 120.14844 * 179.81681 * 18 17 16 32 32 H 1.09002 * 109.52450 * 232.43810 * 20 19 18 33 33 H 1.08995 * 109.52418 * 352.56634 * 20 19 18 34 34 H 1.00893 * 111.10138 * 42.30552 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8772 1.0332 0.0000 4 6 2.0122 -0.6707 1.2642 5 7 3.4810 -0.5879 1.3525 6 6 4.0917 0.3822 2.1000 7 1 3.4958 1.1047 2.6379 8 6 5.4770 0.4375 2.1667 9 7 6.2030 -0.4425 1.5109 10 14 6.3106 1.7613 3.1875 11 1 5.8880 1.6327 4.6053 12 1 7.7843 1.6042 3.0935 13 1 5.9224 3.0998 2.6747 14 6 4.2255 -1.5312 0.6495 15 6 4.9728 -2.4883 1.3277 16 6 5.6669 -3.4455 0.6143 17 6 5.6223 -3.4543 -0.7685 18 6 4.8911 -2.4935 -1.4469 19 6 4.2060 -1.5313 -0.7386 20 6 3.4243 -0.4525 -1.4678 21 7 1.9936 -0.6474 -1.2258 22 1 -0.3634 0.5453 0.8710 23 1 -0.3633 0.4817 -0.9078 24 1 -0.3633 -1.0270 0.0367 25 1 1.7090 -1.7177 1.2561 26 1 1.5696 -0.1747 2.1280 27 1 7.1711 -0.4040 1.5578 28 1 5.0097 -2.4832 2.4070 29 1 6.2478 -4.1903 1.1381 30 1 6.1588 -4.2121 -1.3201 31 1 4.8587 -2.4986 -2.5264 32 1 3.7258 0.5280 -1.0992 33 1 3.6249 -0.5171 -2.5372 34 1 1.4485 -0.3511 -2.0215 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230231615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:08 Heat of formation + Delta-G solvation = 59.835317 kcal Electronic energy + Delta-G solvation = -16965.237962 eV Core-core repulsion = 14477.690366 eV Total energy + Delta-G solvation = -2487.547595 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.85659 -36.27099 -34.60747 -31.79211 -31.17974 -29.08464 -27.91409 -25.84982 -24.13550 -23.06820 -21.09748 -19.62812 -19.48108 -17.37856 -15.57905 -15.47514 -14.66772 -14.40027 -13.99230 -13.83900 -13.53461 -13.08320 -12.51974 -12.17012 -11.81648 -11.77077 -11.40291 -11.07634 -10.96635 -10.81910 -10.69932 -10.52403 -10.43530 -9.96756 -9.87415 -9.67960 -9.04689 -7.81478 -7.68697 -7.23624 -6.81238 -5.45468 -3.38058 2.91451 3.05075 3.30890 3.34909 3.37063 4.33412 4.75086 5.17815 5.30644 5.40990 5.54550 5.70214 5.84183 5.93244 6.10137 6.17130 6.24000 6.35374 6.37894 6.43586 6.46881 6.53139 6.71858 6.82222 7.07766 7.34067 7.46673 7.58031 7.75079 7.86619 7.94321 7.99670 8.09912 8.38372 8.49002 9.17141 9.68425 10.09838 11.12021 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.013913 C = 0.009422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.518565 B = 2012.070745 C = 2970.902329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.032 0.968 4 C 0.151 3.849 5 N -0.547 5.547 6 C -0.253 4.253 7 H 0.083 0.917 8 C -0.010 4.010 9 N -0.874 5.874 10 Si 0.915 3.085 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.284 1.284 14 C 0.270 3.730 15 C -0.051 4.051 16 C -0.135 4.135 17 C -0.171 4.171 18 C -0.121 4.121 19 C -0.119 4.119 20 C 0.121 3.879 21 N -0.689 5.689 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.259 0.741 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 -0.897 -3.364 7.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.042 4.042 3 H 0.050 0.950 4 C 0.026 3.974 5 N -0.256 5.256 6 C -0.381 4.381 7 H 0.100 0.900 8 C -0.208 4.208 9 N -0.515 5.515 10 Si 0.744 3.256 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.210 1.210 14 C 0.170 3.830 15 C -0.075 4.075 16 C -0.155 4.155 17 C -0.191 4.191 18 C -0.141 4.141 19 C -0.123 4.123 20 C -0.007 4.007 21 N -0.321 5.321 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.314 -1.324 -2.942 7.090 hybrid contribution 0.832 1.761 0.211 1.959 sum -5.482 0.437 -2.731 6.140 Atomic orbital electron populations 1.21904 0.95663 1.01982 1.00983 1.21535 0.93449 0.96431 0.92755 0.94965 1.20873 0.83366 0.98931 0.94265 1.41943 1.00420 1.30838 1.52427 1.19376 0.89926 1.05198 1.23583 0.89952 1.24947 0.96391 0.99117 1.00384 1.70012 1.05284 1.33959 1.42274 0.86160 0.78618 0.81063 0.79761 1.20932 1.21378 1.21037 1.16579 0.90674 0.87413 0.88328 1.20744 0.97314 0.91333 0.98086 1.20500 1.01382 0.99729 0.93841 1.20449 1.03798 1.00602 0.94214 1.20235 1.00374 0.96318 0.97147 1.19771 1.01311 0.97649 0.93544 1.20671 0.86102 0.96864 0.97050 1.59128 1.04320 1.64421 1.04265 0.92486 0.93435 0.92117 0.93129 0.91944 0.92927 0.88722 0.89200 0.89110 0.88983 0.93919 0.92723 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.20 37.16 0.34 -1.67 16 2 C 0.07 1.25 2.81 -69.10 -0.19 1.06 16 3 H 0.03 0.64 7.84 -51.93 -0.41 0.23 16 4 C 0.15 3.10 5.32 -4.56 -0.02 3.07 16 5 N -0.55 -13.51 2.37 -113.67 -0.27 -13.78 16 6 C -0.25 -6.67 9.83 -15.11 -0.15 -6.82 16 7 H 0.08 2.07 7.82 -52.48 -0.41 1.66 16 8 C -0.01 -0.26 5.38 -17.45 -0.09 -0.35 16 9 N -0.87 -24.52 8.79 55.49 0.49 -24.03 16 10 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.27 6.80 3.51 -83.97 -0.29 6.51 16 15 C -0.05 -1.27 7.08 -39.32 -0.28 -1.55 16 16 C -0.13 -3.07 10.03 -39.59 -0.40 -3.47 16 17 C -0.17 -3.70 10.05 -39.45 -0.40 -4.10 16 18 C -0.12 -2.66 9.70 -39.68 -0.38 -3.04 16 19 C -0.12 -2.78 5.51 -104.01 -0.57 -3.36 16 20 C 0.12 2.51 6.07 -4.66 -0.03 2.48 16 21 N -0.69 -12.46 6.22 -109.30 -0.68 -13.13 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.57 8.03 -51.93 -0.42 0.16 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 26 H 0.06 1.19 8.01 -51.93 -0.42 0.77 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.09 2.48 8.05 -52.49 -0.42 2.06 16 29 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 30 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.09 1.78 8.00 -52.48 -0.42 1.36 16 32 H 0.04 0.99 7.70 -51.93 -0.40 0.59 16 33 H 0.05 1.00 7.95 -51.93 -0.41 0.58 16 34 H 0.33 5.00 8.49 -39.30 -0.33 4.67 16 LS Contribution 273.40 15.07 4.12 4.12 Total: -1.00 -28.81 273.40 -8.72 -37.53 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.88 Total: 4.22 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.47 Total: -11.24 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.46 Total: -50.95 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.81 -8.72 -37.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230231615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.369 kcal (2) G-P(sol) polarization free energy of solvation -28.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds