Wall clock time and date at job start Mon Mar 30 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 108.57157 * 2 1 4 4 C 1.51018 * 108.62118 * 117.94765 * 2 1 3 5 5 N 1.47370 * 110.08769 * 184.74657 * 4 2 1 6 6 C 1.36848 * 121.15514 * 97.66417 * 5 4 2 7 7 H 1.08003 * 119.99893 * 359.97438 * 6 5 4 8 8 C 1.38795 * 119.99794 * 179.97438 * 6 5 4 9 9 N 1.31588 * 120.00128 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99693 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47205 * 60.00013 * 10 8 6 12 12 H 1.48501 * 109.46956 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47184 * 299.99747 * 10 8 6 14 14 C 1.39232 * 117.68785 * 277.64571 * 5 4 2 15 15 C 1.39081 * 120.48324 * 247.63858 * 14 5 4 16 16 C 1.38096 * 119.67565 * 177.69247 * 15 14 5 17 17 C 1.38353 * 120.29927 * 0.05971 * 16 15 14 18 18 C 1.38487 * 120.14854 * 0.66278 * 17 16 15 19 19 C 1.37727 * 119.69516 * 359.83662 * 18 17 16 20 20 C 1.51878 * 120.35745 * 178.65823 * 19 18 17 21 21 N 1.46170 * 108.48902 * 242.16071 * 2 1 3 22 22 H 1.08999 * 109.47490 * 302.04629 * 1 2 3 23 23 H 1.09001 * 109.46985 * 62.05071 * 1 2 3 24 24 H 1.09000 * 109.47137 * 182.04818 * 1 2 3 25 25 H 1.09001 * 109.36022 * 64.55989 * 4 2 1 26 26 H 1.08998 * 109.37007 * 304.93814 * 4 2 1 27 27 H 0.97002 * 120.00312 * 180.02562 * 9 8 6 28 28 H 1.07995 * 120.16356 * 357.71883 * 15 14 5 29 29 H 1.08003 * 119.84995 * 180.02562 * 16 15 14 30 30 H 1.07999 * 119.92668 * 180.66124 * 17 16 15 31 31 H 1.08005 * 120.14844 * 179.81681 * 18 17 16 32 32 H 1.09002 * 109.52450 * 232.43810 * 20 19 18 33 33 H 1.08995 * 109.52418 * 352.56634 * 20 19 18 34 34 H 1.00893 * 111.10138 * 42.30552 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8772 1.0332 0.0000 4 6 2.0122 -0.6707 1.2642 5 7 3.4810 -0.5879 1.3525 6 6 4.0917 0.3822 2.1000 7 1 3.4958 1.1047 2.6379 8 6 5.4770 0.4375 2.1667 9 7 6.2030 -0.4425 1.5109 10 14 6.3106 1.7613 3.1875 11 1 5.8880 1.6327 4.6053 12 1 7.7843 1.6042 3.0935 13 1 5.9224 3.0998 2.6747 14 6 4.2255 -1.5312 0.6495 15 6 4.9728 -2.4883 1.3277 16 6 5.6669 -3.4455 0.6143 17 6 5.6223 -3.4543 -0.7685 18 6 4.8911 -2.4935 -1.4469 19 6 4.2060 -1.5313 -0.7386 20 6 3.4243 -0.4525 -1.4678 21 7 1.9936 -0.6474 -1.2258 22 1 -0.3634 0.5453 0.8710 23 1 -0.3633 0.4817 -0.9078 24 1 -0.3633 -1.0270 0.0367 25 1 1.7090 -1.7177 1.2561 26 1 1.5696 -0.1747 2.1280 27 1 7.1711 -0.4040 1.5578 28 1 5.0097 -2.4832 2.4070 29 1 6.2478 -4.1903 1.1381 30 1 6.1588 -4.2121 -1.3201 31 1 4.8587 -2.4986 -2.5264 32 1 3.7258 0.5280 -1.0992 33 1 3.6249 -0.5171 -2.5372 34 1 1.4485 -0.3511 -2.0215 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230231615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:08 Heat of formation + Delta-G solvation = 42.613987 kcal Electronic energy + Delta-G solvation = -16965.984735 eV Core-core repulsion = 14477.690366 eV Total energy + Delta-G solvation = -2488.294368 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57162 -37.87131 -36.38633 -33.45455 -33.00306 -30.81954 -29.57003 -27.53955 -25.82593 -24.76208 -22.84891 -21.32653 -21.13962 -19.24936 -17.31971 -17.07705 -16.45508 -15.92560 -15.75891 -15.60744 -15.30745 -14.73224 -14.19524 -13.76287 -13.44321 -13.29167 -12.92248 -12.81830 -12.69339 -12.47442 -12.44358 -12.19832 -12.01578 -11.80032 -11.56315 -11.45699 -10.96328 -9.61523 -9.25702 -9.03148 -8.71342 -7.42020 -5.39594 1.12100 1.26543 1.42998 1.45280 1.50982 2.42582 3.24186 3.31206 3.48135 3.65990 4.19952 4.23635 4.37884 4.48832 4.53027 4.63016 4.69230 4.74925 4.82394 4.93990 5.05920 5.10433 5.16519 5.24469 5.37667 5.43350 5.59058 5.79547 6.02233 6.15040 6.17306 6.23065 6.50486 6.66708 6.77825 7.16582 7.82213 8.15671 9.08668 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.013913 C = 0.009422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.518565 B = 2012.070745 C = 2970.902329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 H 0.011 0.989 4 C 0.146 3.854 5 N -0.563 5.563 6 C -0.263 4.263 7 H 0.087 0.913 8 C -0.060 4.060 9 N -0.897 5.897 10 Si 0.975 3.025 11 H -0.277 1.277 12 H -0.296 1.296 13 H -0.280 1.280 14 C 0.249 3.751 15 C -0.073 4.073 16 C -0.142 4.142 17 C -0.169 4.169 18 C -0.125 4.125 19 C -0.136 4.136 20 C 0.130 3.870 21 N -0.685 5.685 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.247 0.753 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.008 0.992 33 H 0.081 0.919 34 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 -0.945 -4.726 9.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.037 4.037 3 H 0.029 0.971 4 C 0.022 3.978 5 N -0.274 5.274 6 C -0.391 4.391 7 H 0.105 0.895 8 C -0.255 4.255 9 N -0.540 5.540 10 Si 0.803 3.197 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.206 1.206 14 C 0.150 3.850 15 C -0.098 4.098 16 C -0.162 4.162 17 C -0.188 4.188 18 C -0.144 4.144 19 C -0.140 4.140 20 C 0.001 3.999 21 N -0.319 5.319 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.026 0.974 33 H 0.100 0.900 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.389 -1.379 -4.319 8.669 hybrid contribution 1.117 1.697 0.617 2.123 sum -6.272 0.318 -3.702 7.290 Atomic orbital electron populations 1.21808 0.91920 1.02864 1.02750 1.21414 0.96288 0.94519 0.91489 0.97087 1.21054 0.81456 0.99091 0.96219 1.42150 1.02010 1.30604 1.52627 1.19679 0.90319 1.05556 1.23543 0.89524 1.25641 0.97038 1.01051 1.01808 1.70277 1.04416 1.35385 1.43888 0.85218 0.76944 0.78915 0.78641 1.20308 1.22240 1.20592 1.16865 0.91290 0.87501 0.89393 1.20717 0.99090 0.93054 0.96893 1.20765 1.01043 0.99515 0.94828 1.20845 1.03181 1.01047 0.93774 1.20656 0.99327 0.95636 0.98821 1.20168 1.01870 0.98745 0.93228 1.20540 0.87297 0.94107 0.97982 1.59033 1.03243 1.64375 1.05218 0.91278 0.91230 0.91574 0.93576 0.91088 0.94215 0.91526 0.87429 0.85712 0.85867 0.97352 0.90049 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.20 71.98 0.66 -2.65 16 2 C 0.07 2.58 2.81 44.41 0.12 2.70 16 3 H 0.01 0.44 7.84 -2.39 -0.02 0.42 16 4 C 0.15 5.97 5.32 85.57 0.46 6.43 16 5 N -0.56 -28.38 2.37 -513.55 -1.22 -29.60 16 6 C -0.26 -14.14 9.83 84.04 0.83 -13.31 16 7 H 0.09 4.43 7.82 -2.91 -0.02 4.40 16 8 C -0.06 -3.27 5.38 84.86 0.46 -2.81 16 9 N -0.90 -51.71 8.79 21.65 0.19 -51.51 16 10 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.25 12.72 3.51 38.31 0.13 12.85 16 15 C -0.07 -3.79 7.08 22.44 0.16 -3.63 16 16 C -0.14 -6.42 10.03 22.26 0.22 -6.20 16 17 C -0.17 -6.97 10.05 22.36 0.22 -6.75 16 18 C -0.12 -5.22 9.70 22.21 0.22 -5.01 16 19 C -0.14 -6.29 5.51 -19.47 -0.11 -6.40 16 20 C 0.13 5.20 6.07 86.03 0.52 5.73 16 21 N -0.69 -23.42 6.22 -499.70 -3.11 -26.52 16 22 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 1.42 8.03 -2.39 -0.02 1.40 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 26 H 0.07 2.69 8.01 -2.39 -0.02 2.67 16 27 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.07 3.69 8.05 -2.91 -0.02 3.67 16 29 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 31 H 0.12 4.31 8.00 -2.91 -0.02 4.29 16 32 H 0.01 0.39 7.70 -2.39 -0.02 0.37 16 33 H 0.08 2.76 7.95 -2.39 -0.02 2.74 16 34 H 0.35 9.55 8.49 -89.70 -0.76 8.79 16 Total: -1.00 -62.92 273.40 2.11 -60.81 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.32 Total: 19.06 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.90 Total: -19.05 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -4.13 Total: -107.64 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.92 2.11 -60.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230231615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.422 kcal (2) G-P(sol) polarization free energy of solvation -62.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds