Wall clock time and date at job start Mon Mar 30 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86803 * 119.99697 * 2 1 4 4 H 1.48495 * 109.47541 * 89.99436 * 3 2 1 5 5 H 1.48499 * 109.46770 * 209.99910 * 3 2 1 6 6 H 1.48500 * 109.47011 * 329.99363 * 3 2 1 7 7 C 1.40054 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 20.85108 * 7 2 1 9 9 C 1.39982 * 120.00505 * 200.84821 * 7 2 1 10 10 S 1.76219 * 126.25236 * 10.87195 * 9 7 2 11 11 C 1.70877 * 90.46412 * 179.97438 * 10 9 7 12 12 N 1.29494 * 110.91137 * 0.30041 * 11 10 9 13 13 C 1.30750 * 117.63482 * 359.76287 * 12 11 10 14 14 Br 1.89101 * 123.25089 * 179.97438 * 13 12 11 15 15 H 0.97001 * 119.99767 * 174.69722 * 1 2 3 16 16 H 1.08007 * 124.54263 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0467 1.4000 5 1 3.5403 1.4402 -0.7000 6 1 1.4402 2.6526 -0.7002 7 6 2.0092 -1.2129 0.0005 8 1 1.5223 -2.1177 -0.3320 9 6 3.3403 -1.2524 0.4320 10 16 4.2090 0.0435 1.2514 11 6 5.6128 -0.9278 1.3289 12 7 5.4060 -2.0834 0.7822 13 6 4.2185 -2.3164 0.2873 14 35 3.7440 -3.9462 -0.5460 15 1 -0.4850 -0.8365 -0.0776 16 1 6.5484 -0.6178 1.7705 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237979353.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:38 Heat of formation + Delta-G solvation = -5.079751 kcal Electronic energy + Delta-G solvation = -7659.992348 eV Core-core repulsion = 5890.304214 eV Total energy + Delta-G solvation = -1769.688134 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 232.920 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.58174 -36.30761 -32.53019 -31.13646 -26.95214 -24.74054 -21.13195 -20.18465 -18.37047 -16.80984 -15.70342 -15.33030 -14.99106 -14.45474 -13.88722 -13.15830 -12.61320 -12.26153 -11.76188 -11.53922 -11.32100 -10.90796 -10.25326 -10.12997 -9.68391 -9.28496 -6.81896 0.29775 0.54913 0.93659 1.36175 1.53123 1.67536 1.91376 2.07418 2.12393 2.73484 4.27802 4.71725 5.06431 5.26273 5.61910 5.80116 6.12954 7.29985 7.54029 Molecular weight = 232.92amu Principal moments of inertia in cm(-1) A = 0.038475 B = 0.015409 C = 0.011382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.566821 B = 1816.660242 C = 2459.330238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.024 3.976 3 Si 0.996 3.004 4 H -0.218 1.218 5 H -0.225 1.225 6 H -0.223 1.223 7 C -0.416 4.416 8 H 0.095 0.905 9 C 0.007 3.993 10 S -0.005 6.005 11 C -0.131 4.131 12 N -0.423 5.423 13 C -0.181 4.181 14 Br -0.032 7.032 15 H 0.297 0.703 16 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 0.819 -0.423 2.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.201 4.201 3 Si 0.811 3.189 4 H -0.142 1.142 5 H -0.149 1.149 6 H -0.146 1.146 7 C -0.453 4.453 8 H 0.112 0.888 9 C -0.117 4.117 10 S 0.240 5.760 11 C -0.424 4.424 12 N -0.134 5.134 13 C -0.388 4.388 14 Br 0.050 6.950 15 H 0.109 0.891 16 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.469 2.351 -0.315 3.424 hybrid contribution -0.180 -2.623 -0.267 2.642 sum 2.289 -0.271 -0.583 2.377 Atomic orbital electron populations 1.70587 1.08151 1.34313 1.25456 1.28502 0.95815 1.06115 0.89665 0.84089 0.78169 0.72843 0.83817 1.14229 1.14905 1.14638 1.20510 0.94353 0.98608 1.31796 0.88753 1.23064 0.97201 0.93860 0.97568 1.83327 1.10282 1.21240 1.61201 1.27184 1.04099 0.93381 1.17700 1.64931 1.20979 1.20047 1.07402 1.21140 0.92701 0.97487 1.27484 1.96207 1.92058 1.27055 1.79725 0.89073 0.78291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.50 13.66 21.85 0.30 -35.20 13 2 C 0.02 1.12 5.51 85.27 0.47 1.59 13 3 Si 1.00 37.91 24.82 68.60 1.70 39.61 13 4 H -0.22 -7.74 6.89 99.48 0.69 -7.06 13 5 H -0.23 -8.62 6.49 99.48 0.65 -7.97 13 6 H -0.22 -7.72 7.11 99.48 0.71 -7.01 13 7 C -0.42 -20.58 9.34 23.13 0.22 -20.37 13 8 H 0.09 4.83 7.57 -2.91 -0.02 4.80 13 9 C 0.01 0.36 5.88 22.81 0.13 0.49 13 10 S -0.01 -0.23 17.02 -56.49 -0.96 -1.19 13 11 C -0.13 -5.66 12.19 130.59 1.59 -4.07 13 12 N -0.42 -20.78 10.49 -195.32 -2.05 -22.83 13 13 C -0.18 -9.11 7.36 84.97 0.63 -8.48 13 14 Br -0.03 -1.39 33.23 -20.37 -0.68 -2.07 13 15 H 0.30 13.41 8.73 -92.71 -0.81 12.60 13 16 H 0.20 7.01 8.06 -2.91 -0.02 6.99 13 Total: -1.00 -52.69 184.32 2.53 -50.15 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: 1.18 Total: 2.35 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.04 Total: -30.83 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -1.75 Total: -58.03 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.70 Total: 39.61 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -0.96 Total: -1.19 kcal Atomic # 35 Polarization: -1.39 SS G_CDS: -0.68 Total: -2.07 kcal Total: -52.69 2.53 -50.15 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237979353.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.073 kcal (2) G-P(sol) polarization free energy of solvation -52.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds