Wall clock time and date at job start Mon Mar 30 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30755 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47383 * 300.00192 * 3 2 1 6 6 H 1.48501 * 109.47260 * 60.00024 * 3 2 1 7 7 C 1.40040 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.41147 * 119.99914 * 0.02562 * 7 2 1 10 10 N 1.33769 * 119.82815 * 359.97438 * 9 7 2 11 11 C 1.31746 * 121.46897 * 179.97438 * 10 9 7 12 12 O 1.35644 * 119.52592 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99463 * 0.02562 * 12 11 10 14 14 F 1.39896 * 109.47237 * 299.99870 * 13 12 11 15 15 F 1.39901 * 109.47262 * 59.99976 * 13 12 11 16 16 C 1.39624 * 120.95675 * 359.97326 * 11 10 9 17 17 C 1.38559 * 119.55171 * 359.81383 * 16 11 10 18 18 C 1.38681 * 118.63109 * 0.43103 * 17 16 11 19 19 F 1.35104 * 120.47760 * 179.80109 * 18 17 16 20 20 H 0.97000 * 119.99913 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46959 * 179.97438 * 13 12 11 22 22 H 1.07995 * 120.22404 * 180.02562 * 16 11 10 23 23 H 1.07999 * 120.68417 * 180.21594 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8828 2.3965 -1.2124 6 1 1.8829 2.3964 1.2125 7 6 2.0077 -1.2128 0.0005 8 1 3.0877 -1.2128 0.0010 9 6 1.3019 -2.4351 0.0005 10 7 -0.0357 -2.4311 0.0005 11 6 -0.7269 -3.5527 0.0000 12 8 -2.0824 -3.5025 0.0006 13 6 -2.6836 -2.2061 0.0011 14 9 -2.2811 -1.5059 1.1434 15 9 -2.2819 -1.5053 -1.1411 16 6 -0.0844 -4.7923 -0.0011 17 6 1.3002 -4.8443 -0.0056 18 6 2.0100 -3.6529 0.0003 19 9 3.3610 -3.6601 0.0002 20 1 -0.4850 0.8400 0.0004 21 1 -3.7688 -2.3088 0.0011 22 1 -0.6627 -5.7043 -0.0019 23 1 1.8161 -5.7931 -0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238527562.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:37 Heat of formation + Delta-G solvation = -161.143139 kcal Electronic energy + Delta-G solvation = -16653.857749 eV Core-core repulsion = 13245.486217 eV Total energy + Delta-G solvation = -3408.371532 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.91174 -47.28271 -46.05624 -38.80169 -36.49666 -33.69703 -30.70130 -29.28037 -26.31587 -24.72550 -21.94883 -21.31202 -18.23459 -17.84685 -16.73773 -16.66081 -16.04997 -15.27020 -15.00915 -14.33080 -14.27383 -13.42963 -13.15302 -12.72577 -12.59070 -12.34235 -12.30854 -11.88976 -11.75183 -11.48411 -11.17353 -10.92386 -10.79673 -10.69892 -10.12567 -9.45215 -8.38080 -7.99764 -7.33031 -6.58999 -4.69492 2.52841 2.69169 3.04589 3.08925 3.10068 3.51912 3.86268 4.48252 4.56020 5.38880 5.50427 5.72594 5.78549 5.91757 6.00111 6.38752 6.76498 6.96860 7.14119 7.29557 7.58726 7.84543 8.13183 8.47167 8.70915 9.66819 10.11743 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.015358 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.413399 B = 1822.663571 C = 3026.586429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.063 3.937 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.406 4.406 8 H 0.094 0.906 9 C 0.260 3.740 10 N -0.503 5.503 11 C 0.318 3.682 12 O -0.338 6.338 13 C 0.430 3.570 14 F -0.189 7.189 15 F -0.189 7.189 16 C -0.305 4.305 17 C -0.059 4.059 18 C -0.099 4.099 19 F -0.158 7.158 20 H 0.277 0.723 21 H 0.149 0.851 22 H 0.111 0.889 23 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 -0.937 -0.003 4.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.166 4.166 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.436 4.436 8 H 0.112 0.888 9 C 0.136 3.864 10 N -0.229 5.229 11 C 0.132 3.868 12 O -0.251 6.251 13 C 0.339 3.661 14 F -0.171 7.171 15 F -0.171 7.171 16 C -0.329 4.329 17 C -0.084 4.084 18 C -0.123 4.123 19 F -0.138 7.138 20 H 0.088 0.912 21 H 0.166 0.834 22 H 0.129 0.871 23 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.976 -0.144 -0.003 4.978 hybrid contribution 0.968 0.147 -0.003 0.979 sum -4.007 0.003 -0.006 4.007 Atomic orbital electron populations 1.70130 1.07078 1.28325 1.24778 1.26129 0.95065 1.01347 0.94034 0.86156 0.80893 0.80553 0.78689 1.18181 1.19643 1.19636 1.19729 0.94932 0.89077 1.39844 0.88780 1.18144 0.86661 0.91192 0.90443 1.68454 1.07521 1.23577 1.23304 1.19846 0.82075 0.91567 0.93299 1.86613 1.19598 1.30282 1.88651 1.22591 0.94443 0.75834 0.73228 1.93090 1.92883 1.79808 1.51303 1.93092 1.92910 1.79783 1.51308 1.19948 0.92932 0.94915 1.25096 1.20635 0.93323 0.96086 0.98333 1.18576 0.76796 0.95200 1.21702 1.91266 1.29585 1.97364 1.95537 0.91187 0.83407 0.87093 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -17.61 10.91 55.55 0.61 -17.00 14 2 C 0.06 1.57 5.50 -17.33 -0.10 1.47 14 3 Si 0.91 18.42 29.56 -169.99 -5.02 13.39 14 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 14 5 H -0.27 -5.38 7.11 56.52 0.40 -4.97 14 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 7 C -0.41 -10.88 8.99 -37.80 -0.34 -11.22 14 8 H 0.09 2.43 7.42 -52.49 -0.39 2.04 14 9 C 0.26 7.20 6.56 -84.93 -0.56 6.64 14 10 N -0.50 -13.68 5.54 -11.14 -0.06 -13.74 14 11 C 0.32 7.90 7.20 -17.07 -0.12 7.77 14 12 O -0.34 -7.32 10.41 -18.63 -0.19 -7.51 14 13 C 0.43 8.28 6.05 101.05 0.61 8.89 14 14 F -0.19 -4.18 16.29 2.25 0.04 -4.14 14 15 F -0.19 -4.18 16.29 2.25 0.04 -4.14 14 16 C -0.31 -6.98 10.05 -38.95 -0.39 -7.38 14 17 C -0.06 -1.36 10.14 -39.30 -0.40 -1.75 14 18 C -0.10 -2.55 7.34 -38.42 -0.28 -2.83 14 19 F -0.16 -3.93 16.56 2.25 0.04 -3.89 14 20 H 0.28 6.51 8.29 -40.82 -0.34 6.18 14 21 H 0.15 1.90 8.14 -51.93 -0.42 1.47 14 22 H 0.11 2.22 8.06 -52.49 -0.42 1.80 14 23 H 0.12 2.25 8.06 -52.49 -0.42 1.83 14 LS Contribution 228.68 15.07 3.45 3.45 Total: -1.00 -29.90 228.68 -3.48 -33.39 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -0.79 Total: -1.39 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.57 Total: 1.59 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.54 Total: -30.74 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.19 Total: -7.51 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 0.11 Total: -12.17 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.90 -3.48 -33.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238527562.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.755 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds