Wall clock time and date at job start Mon Mar 30 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30755 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47383 * 300.00192 * 3 2 1 6 6 H 1.48501 * 109.47260 * 60.00024 * 3 2 1 7 7 C 1.40040 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.41147 * 119.99914 * 0.02562 * 7 2 1 10 10 N 1.33769 * 119.82815 * 359.97438 * 9 7 2 11 11 C 1.31746 * 121.46897 * 179.97438 * 10 9 7 12 12 O 1.35644 * 119.52592 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99463 * 0.02562 * 12 11 10 14 14 F 1.39896 * 109.47237 * 299.99870 * 13 12 11 15 15 F 1.39901 * 109.47262 * 59.99976 * 13 12 11 16 16 C 1.39624 * 120.95675 * 359.97326 * 11 10 9 17 17 C 1.38559 * 119.55171 * 359.81383 * 16 11 10 18 18 C 1.38681 * 118.63109 * 0.43103 * 17 16 11 19 19 F 1.35104 * 120.47760 * 179.80109 * 18 17 16 20 20 H 0.97000 * 119.99913 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46959 * 179.97438 * 13 12 11 22 22 H 1.07995 * 120.22404 * 180.02562 * 16 11 10 23 23 H 1.07999 * 120.68417 * 180.21594 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8828 2.3965 -1.2124 6 1 1.8829 2.3964 1.2125 7 6 2.0077 -1.2128 0.0005 8 1 3.0877 -1.2128 0.0010 9 6 1.3019 -2.4351 0.0005 10 7 -0.0357 -2.4311 0.0005 11 6 -0.7269 -3.5527 0.0000 12 8 -2.0824 -3.5025 0.0006 13 6 -2.6836 -2.2061 0.0011 14 9 -2.2811 -1.5059 1.1434 15 9 -2.2819 -1.5053 -1.1411 16 6 -0.0844 -4.7923 -0.0011 17 6 1.3002 -4.8443 -0.0056 18 6 2.0100 -3.6529 0.0003 19 9 3.3610 -3.6601 0.0002 20 1 -0.4850 0.8400 0.0004 21 1 -3.7688 -2.3088 0.0011 22 1 -0.6627 -5.7043 -0.0019 23 1 1.8161 -5.7931 -0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238527562.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:37 Heat of formation + Delta-G solvation = -180.872430 kcal Electronic energy + Delta-G solvation = -16654.713276 eV Core-core repulsion = 13245.486217 eV Total energy + Delta-G solvation = -3409.227058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.53272 -49.21061 -47.70225 -40.63042 -38.27443 -35.56615 -32.59099 -31.17371 -28.13985 -26.41784 -23.80227 -23.15927 -20.02236 -19.62369 -18.37436 -18.33457 -17.94679 -17.07132 -16.82665 -16.19738 -16.03946 -15.23479 -14.90843 -14.40153 -14.39823 -14.07524 -14.00770 -13.67054 -13.52384 -13.20924 -12.76604 -12.75156 -12.54639 -12.48560 -11.87218 -11.25626 -10.26588 -9.90244 -9.25111 -8.44030 -6.66614 0.63203 0.83853 1.38987 1.48075 1.54688 1.95269 2.18528 2.68926 3.03820 3.58016 3.82322 3.91196 4.15160 4.17482 4.28675 4.59415 4.93329 5.08003 5.27298 5.45778 5.73332 5.92357 6.21524 6.55842 6.77814 7.73400 8.28675 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.015358 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.413399 B = 1822.663571 C = 3026.586429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.021 3.979 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.441 4.441 8 H 0.090 0.910 9 C 0.228 3.772 10 N -0.524 5.524 11 C 0.297 3.703 12 O -0.334 6.334 13 C 0.417 3.583 14 F -0.209 7.209 15 F -0.209 7.209 16 C -0.299 4.299 17 C -0.049 4.049 18 C -0.133 4.133 19 F -0.160 7.160 20 H 0.283 0.717 21 H 0.223 0.777 22 H 0.146 0.854 23 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -1.207 -0.005 5.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.205 4.205 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.108 0.892 9 C 0.103 3.897 10 N -0.251 5.251 11 C 0.111 3.889 12 O -0.247 6.247 13 C 0.328 3.672 14 F -0.191 7.191 15 F -0.191 7.191 16 C -0.322 4.322 17 C -0.073 4.073 18 C -0.156 4.156 19 F -0.140 7.140 20 H 0.094 0.906 21 H 0.239 0.761 22 H 0.163 0.837 23 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.645 -0.439 -0.006 5.662 hybrid contribution 1.070 0.106 -0.002 1.075 sum -4.575 -0.333 -0.008 4.587 Atomic orbital electron populations 1.70200 1.08387 1.29519 1.24982 1.26982 0.95958 1.04350 0.93163 0.85025 0.79227 0.75672 0.79068 1.18099 1.18756 1.18744 1.19983 0.95027 0.90277 1.41804 0.89164 1.18581 0.87440 0.92432 0.91204 1.68418 1.07534 1.25097 1.24006 1.20332 0.83367 0.91957 0.93198 1.86613 1.17884 1.31786 1.88381 1.23817 0.97181 0.74446 0.71754 1.93047 1.93356 1.80277 1.52387 1.93048 1.93381 1.80253 1.52392 1.20423 0.93269 0.95611 1.22873 1.21061 0.93454 0.96705 0.96053 1.18795 0.77027 0.95925 1.23828 1.91242 1.29578 1.97402 1.95745 0.90634 0.76098 0.83667 0.82654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -37.06 10.91 21.84 0.24 -36.82 14 2 C 0.02 1.06 5.50 85.29 0.47 1.53 14 3 Si 0.99 37.99 29.56 68.60 2.03 40.02 14 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 14 5 H -0.26 -9.65 7.11 99.48 0.71 -8.94 14 6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 14 7 C -0.44 -24.27 8.99 23.42 0.21 -24.06 14 8 H 0.09 4.82 7.42 -2.91 -0.02 4.80 14 9 C 0.23 12.87 6.56 40.21 0.26 13.13 14 10 N -0.52 -28.75 5.54 -302.29 -1.68 -30.42 14 11 C 0.30 14.50 7.20 85.04 0.61 15.11 14 12 O -0.33 -13.84 10.41 -89.58 -0.93 -14.78 14 13 C 0.42 15.33 6.05 113.37 0.69 16.02 14 14 F -0.21 -9.09 16.29 44.97 0.73 -8.36 14 15 F -0.21 -9.10 16.29 44.97 0.73 -8.36 14 16 C -0.30 -13.01 10.05 22.68 0.23 -12.78 14 17 C -0.05 -2.13 10.14 22.45 0.23 -1.90 14 18 C -0.13 -6.83 7.34 23.02 0.17 -6.66 14 19 F -0.16 -8.03 16.56 44.97 0.74 -7.28 14 20 H 0.28 13.40 8.29 -92.71 -0.77 12.63 14 21 H 0.22 4.77 8.14 -2.39 -0.02 4.75 14 22 H 0.15 5.25 8.06 -2.91 -0.02 5.23 14 23 H 0.16 5.47 8.06 -2.91 -0.02 5.45 14 Total: -1.00 -65.65 228.68 6.00 -59.65 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.26 Total: 5.98 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 2.87 Total: 0.38 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -1.44 Total: -67.25 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.93 Total: -14.78 kcal Atomic # 9 Polarization: -26.22 SS G_CDS: 2.21 Total: -24.01 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -65.65 6.00 -59.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238527562.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.225 kcal (2) G-P(sol) polarization free energy of solvation -65.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds