Wall clock time and date at job start Mon Mar 30 2020 03:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30768 * 1 3 3 Si 1.86793 * 120.00331 * 2 1 4 4 H 1.48498 * 109.47029 * 240.00027 * 3 2 1 5 5 H 1.48504 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47198 * 119.99584 * 3 2 1 7 7 C 1.40016 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.41214 * 120.00319 * 0.02562 * 7 2 1 10 10 C 1.40648 * 119.76441 * 180.02562 * 9 7 2 11 11 C 1.38184 * 119.14162 * 179.97438 * 10 9 7 12 12 C 1.38977 * 118.64220 * 359.97438 * 11 10 9 13 13 F 1.35099 * 120.27566 * 180.02562 * 12 11 10 14 14 C 1.39859 * 119.44749 * 0.02562 * 12 11 10 15 15 O 1.35658 * 119.58510 * 180.02562 * 14 12 11 16 16 C 1.42898 * 116.99834 * 179.97438 * 15 14 12 17 17 F 1.39900 * 109.46798 * 299.99456 * 16 15 14 18 18 F 1.39893 * 109.47557 * 59.99769 * 16 15 14 19 19 N 1.31744 * 120.83528 * 0.02562 * 14 12 11 20 20 H 0.96996 * 119.99952 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.42865 * 0.02562 * 10 9 7 22 22 H 1.07997 * 120.67900 * 180.02562 * 11 10 9 23 23 H 1.09005 * 109.46728 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6176 0.0000 4 1 3.0955 1.6962 -1.2125 5 1 1.2768 2.7464 -0.0006 6 1 3.0954 1.6963 1.2125 7 6 2.0077 -1.2126 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3016 -2.4356 0.0005 10 6 2.0098 -3.6507 0.0016 11 6 1.3059 -4.8398 0.0022 12 6 -0.0830 -4.7918 0.0021 13 9 -0.8040 -5.9343 0.0032 14 6 -0.7281 -3.5509 0.0010 15 8 -2.0837 -3.5007 0.0015 16 6 -2.6849 -2.2043 0.0009 17 9 -2.2824 -1.5032 1.1427 18 9 -2.2833 -1.5045 -1.1419 19 7 -0.0358 -2.4299 -0.0005 20 1 -0.4850 0.8400 -0.0004 21 1 3.0898 -3.6544 0.0029 22 1 1.8245 -5.7872 0.0034 23 1 -3.7701 -2.3072 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238532280.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:23 Heat of formation + Delta-G solvation = -180.074517 kcal Electronic energy + Delta-G solvation = -16675.431053 eV Core-core repulsion = 13266.238595 eV Total energy + Delta-G solvation = -3409.192458 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.57929 -49.25151 -47.74279 -40.57808 -38.48577 -35.42882 -32.40950 -31.44872 -27.96565 -26.46990 -23.71381 -23.29662 -20.07608 -19.57821 -18.46193 -18.44440 -17.79780 -17.15951 -16.82579 -16.40462 -16.02294 -15.09258 -14.98135 -14.41267 -14.40931 -14.11233 -14.04445 -13.57710 -13.33767 -13.14098 -12.80902 -12.72861 -12.61104 -12.55878 -11.90395 -11.11858 -10.21645 -9.91731 -9.30281 -8.40323 -6.60510 0.61693 0.87569 1.43772 1.53763 1.55973 1.85973 2.21358 2.70335 2.96641 3.66067 3.79445 3.84569 4.12966 4.14750 4.27480 4.59899 4.93368 5.12514 5.30620 5.55444 5.69727 5.98599 6.23307 6.59625 6.81103 7.77167 8.33526 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.012467 C = 0.008982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.512951 B = 2245.408676 C = 3116.431719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.017 3.983 3 Si 0.992 3.008 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.432 4.432 8 H 0.106 0.894 9 C 0.231 3.769 10 C -0.273 4.273 11 C -0.054 4.054 12 C -0.147 4.147 13 F -0.161 7.161 14 C 0.287 3.713 15 O -0.341 6.341 16 C 0.420 3.580 17 F -0.206 7.206 18 F -0.206 7.206 19 N -0.522 5.522 20 H 0.281 0.719 21 H 0.139 0.861 22 H 0.155 0.845 23 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 0.364 0.005 1.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.209 4.209 3 Si 0.812 3.188 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.462 4.462 8 H 0.124 0.876 9 C 0.108 3.892 10 C -0.296 4.296 11 C -0.077 4.077 12 C -0.172 4.172 13 F -0.141 7.141 14 C 0.100 3.900 15 O -0.254 6.254 16 C 0.331 3.669 17 F -0.188 7.188 18 F -0.188 7.188 19 N -0.249 5.249 20 H 0.092 0.908 21 H 0.156 0.844 22 H 0.173 0.827 23 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.591 1.102 0.004 2.816 hybrid contribution 0.470 -0.136 0.000 0.489 sum -2.121 0.966 0.004 2.331 Atomic orbital electron populations 1.70219 1.08695 1.29553 1.25325 1.27091 0.95862 1.04766 0.93151 0.85095 0.78469 0.75054 0.80165 1.18145 1.19803 1.18134 1.20104 0.95499 0.89604 1.40963 0.87556 1.18786 0.86680 0.94199 0.89530 1.21843 1.00561 0.91493 1.15658 1.21092 0.90157 0.99959 0.96530 1.17455 0.90143 0.79273 1.30288 1.91270 1.78188 1.48193 1.96407 1.20305 0.83869 0.90755 0.95042 1.86654 1.18021 1.32346 1.88428 1.23771 0.97043 0.74222 0.71890 1.93045 1.93336 1.80124 1.52301 1.93043 1.93359 1.80183 1.52223 1.68500 1.09762 1.22655 1.23989 0.90844 0.84351 0.82736 0.76243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -36.79 10.91 21.84 0.24 -36.55 14 2 C 0.02 0.80 5.50 85.28 0.47 1.26 14 3 Si 0.99 35.85 29.56 68.60 2.03 37.88 14 4 H -0.26 -8.95 7.11 99.48 0.71 -8.25 14 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 14 6 H -0.26 -8.95 7.11 99.48 0.71 -8.24 14 7 C -0.43 -21.71 9.13 23.43 0.21 -21.50 14 8 H 0.11 4.80 7.85 -2.91 -0.02 4.78 14 9 C 0.23 12.28 6.55 40.17 0.26 12.54 14 10 C -0.27 -12.61 9.83 22.85 0.22 -12.39 14 11 C -0.05 -2.36 10.13 22.43 0.23 -2.13 14 12 C -0.15 -7.20 7.38 22.84 0.17 -7.03 14 13 F -0.16 -7.52 17.13 44.97 0.77 -6.75 14 14 C 0.29 14.93 7.21 85.10 0.61 15.55 14 15 O -0.34 -15.74 10.28 -89.74 -0.92 -16.67 14 16 C 0.42 16.47 6.05 113.37 0.69 17.16 14 17 F -0.21 -9.29 16.29 44.97 0.73 -8.56 14 18 F -0.21 -9.29 16.30 44.97 0.73 -8.56 14 19 N -0.52 -28.66 5.54 -302.22 -1.68 -30.33 14 20 H 0.28 13.29 8.29 -92.71 -0.77 12.52 14 21 H 0.14 5.51 8.06 -2.91 -0.02 5.48 14 22 H 0.16 5.47 8.06 -2.91 -0.02 5.45 14 23 H 0.22 5.34 8.14 -2.38 -0.02 5.32 14 Total: -1.00 -63.98 229.51 6.03 -57.95 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.26 Total: 8.13 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 2.87 Total: 3.46 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -1.44 Total: -66.88 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.92 Total: -16.67 kcal Atomic # 9 Polarization: -26.11 SS G_CDS: 2.24 Total: -23.87 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -63.98 6.03 -57.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238532280.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.127 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds