Wall clock time and date at job start Mon Mar 30 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86807 * 119.99848 * 2 1 4 4 H 1.48494 * 109.47056 * 274.69703 * 3 2 1 5 5 H 1.48499 * 109.46749 * 34.69392 * 3 2 1 6 6 H 1.48503 * 109.46911 * 154.69099 * 3 2 1 7 7 C 1.39942 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99815 * 197.41181 * 7 2 1 9 9 C 1.41116 * 120.00001 * 17.41407 * 7 2 1 10 10 C 1.41002 * 120.68237 * 23.69364 * 9 7 2 11 11 C 1.38186 * 118.24654 * 180.02562 * 10 9 7 12 12 F 1.35099 * 120.23840 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.52630 * 359.97438 * 11 10 9 14 14 N 1.32026 * 121.37764 * 0.02562 * 13 11 10 15 15 C 1.32023 * 121.91744 * 0.02562 * 14 13 11 16 16 O 1.35428 * 119.85431 * 179.97438 * 15 14 13 17 17 C 1.42895 * 117.00034 * 0.02562 * 16 15 14 18 18 F 1.39905 * 109.47207 * 299.99609 * 17 16 15 19 19 F 1.39901 * 109.47399 * 59.99732 * 17 16 15 20 20 H 0.97002 * 120.00321 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.87431 * 0.03518 * 10 9 7 22 22 H 1.07999 * 119.31177 * 179.72633 * 13 11 10 23 23 H 1.08996 * 109.47815 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3908 2.1038 -1.3953 5 1 1.4931 2.6220 0.7969 6 1 3.5862 1.4136 0.5985 7 6 2.0083 -1.2119 0.0005 8 1 3.0513 -1.2332 0.2805 9 6 1.3513 -2.4062 -0.3647 10 6 0.2029 -2.3745 -1.1823 11 6 -0.4008 -3.5739 -1.5086 12 9 -1.5035 -3.5904 -2.2890 13 6 0.1339 -4.7623 -1.0285 14 7 1.2102 -4.7724 -0.2639 15 6 1.8306 -3.6598 0.0828 16 8 2.9313 -3.7187 0.8696 17 6 3.3631 -5.0160 1.2850 18 9 2.3440 -5.6343 2.0175 19 9 3.6638 -5.7902 0.1592 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1941 -1.4376 -1.5441 22 1 -0.3433 -5.6973 -1.2820 23 1 4.2523 -4.9209 1.9081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238532666.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:29 Heat of formation + Delta-G solvation = -171.874410 kcal Electronic energy + Delta-G solvation = -16236.542558 eV Core-core repulsion = 12827.705683 eV Total energy + Delta-G solvation = -3408.836875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.32282 -47.80336 -46.46020 -38.98303 -36.46289 -34.35198 -30.80799 -29.27160 -26.05308 -25.23186 -22.18029 -21.46014 -18.21059 -17.83106 -17.52192 -17.07643 -16.02367 -15.55029 -14.99779 -14.74503 -14.61221 -13.66989 -13.29230 -13.10379 -13.03348 -12.79478 -12.52951 -12.00962 -11.80946 -11.71847 -11.50595 -11.17839 -11.01724 -10.69607 -10.34722 -9.59199 -8.59723 -8.35685 -7.46661 -7.05365 -4.67508 2.30112 2.56864 2.93643 2.98723 3.00347 3.50972 3.72088 4.24836 4.31921 5.10406 5.17937 5.44309 5.50698 5.59356 6.23593 6.44014 6.53220 6.85217 7.17848 7.27397 7.69919 7.82282 8.23039 8.37898 8.47906 9.10588 9.83633 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.011166 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.438681 B = 2507.038869 C = 3532.904094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.424 4.424 8 H 0.095 0.905 9 C 0.094 3.906 10 C -0.170 4.170 11 C 0.054 3.946 12 F -0.157 7.157 13 C -0.043 4.043 14 N -0.477 5.477 15 C 0.173 3.827 16 O -0.307 6.307 17 C 0.420 3.580 18 F -0.204 7.204 19 F -0.205 7.205 20 H 0.289 0.711 21 H 0.146 0.854 22 H 0.136 0.864 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -1.457 1.325 4.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.150 4.150 3 Si 0.745 3.255 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.452 4.452 8 H 0.113 0.887 9 C 0.089 3.911 10 C -0.196 4.196 11 C 0.033 3.967 12 F -0.136 7.136 13 C -0.198 4.198 14 N -0.196 5.196 15 C -0.010 4.010 16 O -0.220 6.220 17 C 0.328 3.672 18 F -0.186 7.186 19 F -0.187 7.187 20 H 0.100 0.900 21 H 0.164 0.836 22 H 0.154 0.846 23 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.466 -1.938 1.678 5.149 hybrid contribution -0.390 1.124 -0.412 1.259 sum 4.076 -0.814 1.266 4.345 Atomic orbital electron populations 1.69794 1.07882 1.30342 1.32044 1.26101 0.94888 1.02095 0.91947 0.86065 0.80585 0.79398 0.79498 1.18958 1.19916 1.18058 1.19586 0.98543 0.90184 1.36898 0.88728 1.17375 0.92015 0.90396 0.91339 1.21456 0.99450 0.96479 1.02175 1.18598 0.86144 0.96095 0.95905 1.91350 1.51594 1.97549 1.73073 1.21248 0.97258 0.95576 1.05720 1.66640 1.09434 1.29693 1.13862 1.19740 0.91278 0.90660 0.99318 1.86620 1.43083 1.27449 1.64843 1.22914 0.87878 0.76289 0.80098 1.93050 1.64441 1.83819 1.77246 1.93043 1.93208 1.76774 1.55680 0.89995 0.83647 0.84629 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.77 10.92 55.55 0.61 -18.16 14 2 C 0.07 1.64 5.18 -17.33 -0.09 1.55 14 3 Si 0.92 17.25 29.59 -169.99 -5.03 12.22 14 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 14 6 H -0.26 -4.75 7.11 56.52 0.40 -4.34 14 7 C -0.42 -10.59 8.75 -37.85 -0.33 -10.92 14 8 H 0.09 2.27 7.65 -52.48 -0.40 1.87 14 9 C 0.09 2.46 5.60 -106.53 -0.60 1.86 14 10 C -0.17 -4.34 8.78 -38.55 -0.34 -4.68 14 11 C 0.05 1.32 7.32 -39.36 -0.29 1.03 14 12 F -0.16 -3.56 17.28 2.25 0.04 -3.53 14 13 C -0.04 -1.02 11.16 -17.23 -0.19 -1.21 14 14 N -0.48 -11.89 8.07 -12.55 -0.10 -11.99 14 15 C 0.17 4.38 7.23 -16.24 -0.12 4.26 14 16 O -0.31 -6.88 9.70 -17.98 -0.17 -7.05 14 17 C 0.42 7.56 6.06 101.05 0.61 8.17 14 18 F -0.20 -4.05 16.57 2.25 0.04 -4.01 14 19 F -0.21 -4.00 16.57 2.25 0.04 -3.96 14 20 H 0.29 6.26 8.30 -40.82 -0.34 5.92 14 21 H 0.15 3.75 6.20 -52.49 -0.33 3.43 14 22 H 0.14 2.85 8.06 -52.49 -0.42 2.43 14 23 H 0.16 1.87 8.14 -51.93 -0.42 1.45 14 LS Contribution 228.45 15.07 3.44 3.44 Total: -1.00 -28.17 228.45 -3.19 -31.37 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -0.71 Total: 1.63 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.34 Total: 0.06 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.51 Total: -30.15 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.17 Total: -7.05 kcal Atomic # 9 Polarization: -11.61 SS G_CDS: 0.11 Total: -11.50 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.17 -3.19 -31.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238532666.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.508 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds