Wall clock time and date at job start Mon Mar 30 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86807 * 119.99848 * 2 1 4 4 H 1.48494 * 109.47056 * 274.69703 * 3 2 1 5 5 H 1.48499 * 109.46749 * 34.69392 * 3 2 1 6 6 H 1.48503 * 109.46911 * 154.69099 * 3 2 1 7 7 C 1.39942 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99815 * 197.41181 * 7 2 1 9 9 C 1.41116 * 120.00001 * 17.41407 * 7 2 1 10 10 C 1.41002 * 120.68237 * 23.69364 * 9 7 2 11 11 C 1.38186 * 118.24654 * 180.02562 * 10 9 7 12 12 F 1.35099 * 120.23840 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.52630 * 359.97438 * 11 10 9 14 14 N 1.32026 * 121.37764 * 0.02562 * 13 11 10 15 15 C 1.32023 * 121.91744 * 0.02562 * 14 13 11 16 16 O 1.35428 * 119.85431 * 179.97438 * 15 14 13 17 17 C 1.42895 * 117.00034 * 0.02562 * 16 15 14 18 18 F 1.39905 * 109.47207 * 299.99609 * 17 16 15 19 19 F 1.39901 * 109.47399 * 59.99732 * 17 16 15 20 20 H 0.97002 * 120.00321 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.87431 * 0.03518 * 10 9 7 22 22 H 1.07999 * 119.31177 * 179.72633 * 13 11 10 23 23 H 1.08996 * 109.47815 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3908 2.1038 -1.3953 5 1 1.4931 2.6220 0.7969 6 1 3.5862 1.4136 0.5985 7 6 2.0083 -1.2119 0.0005 8 1 3.0513 -1.2332 0.2805 9 6 1.3513 -2.4062 -0.3647 10 6 0.2029 -2.3745 -1.1823 11 6 -0.4008 -3.5739 -1.5086 12 9 -1.5035 -3.5904 -2.2890 13 6 0.1339 -4.7623 -1.0285 14 7 1.2102 -4.7724 -0.2639 15 6 1.8306 -3.6598 0.0828 16 8 2.9313 -3.7187 0.8696 17 6 3.3631 -5.0160 1.2850 18 9 2.3440 -5.6343 2.0175 19 9 3.6638 -5.7902 0.1592 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1941 -1.4376 -1.5441 22 1 -0.3433 -5.6973 -1.2820 23 1 4.2523 -4.9209 1.9081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238532666.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:29 Heat of formation + Delta-G solvation = -190.274600 kcal Electronic energy + Delta-G solvation = -16237.340450 eV Core-core repulsion = 12827.705683 eV Total energy + Delta-G solvation = -3409.634767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.81366 -49.67470 -47.96335 -40.80889 -38.21460 -36.18456 -32.69279 -31.12951 -27.86215 -26.83212 -24.01520 -23.29829 -19.91558 -19.66972 -19.11669 -18.59843 -17.82741 -17.32813 -16.67559 -16.51361 -16.40135 -15.39764 -15.00111 -14.74272 -14.67019 -14.38262 -14.31784 -13.73070 -13.53593 -13.45241 -12.98799 -12.83167 -12.75921 -12.40131 -11.97664 -11.33198 -10.49342 -10.27304 -9.34517 -8.83346 -6.56664 0.43244 0.66269 1.40685 1.50145 1.56982 1.98932 2.16033 2.51630 2.83717 3.31780 3.56545 3.66954 3.91893 4.01195 4.36957 4.55521 4.66627 5.04256 5.31082 5.37246 5.80404 5.96687 6.35135 6.52643 6.61235 7.20608 8.09706 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.011166 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.438681 B = 2507.038869 C = 3532.904094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.033 3.967 3 Si 0.997 3.003 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.444 4.444 8 H 0.098 0.902 9 C 0.066 3.934 10 C -0.190 4.190 11 C 0.052 3.948 12 F -0.149 7.149 13 C -0.050 4.050 14 N -0.485 5.485 15 C 0.162 3.838 16 O -0.319 6.319 17 C 0.411 3.589 18 F -0.216 7.216 19 F -0.215 7.215 20 H 0.300 0.700 21 H 0.137 0.863 22 H 0.163 0.837 23 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 -0.766 1.807 5.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.185 4.185 3 Si 0.816 3.184 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.174 1.174 7 C -0.472 4.472 8 H 0.116 0.884 9 C 0.061 3.939 10 C -0.216 4.216 11 C 0.030 3.970 12 F -0.129 7.129 13 C -0.205 4.205 14 N -0.205 5.205 15 C -0.021 4.021 16 O -0.231 6.231 17 C 0.321 3.679 18 F -0.198 7.198 19 F -0.197 7.197 20 H 0.111 0.889 21 H 0.154 0.846 22 H 0.180 0.820 23 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.477 -1.275 2.161 6.025 hybrid contribution -0.725 0.869 -0.534 1.251 sum 4.753 -0.406 1.628 5.040 Atomic orbital electron populations 1.69822 1.09433 1.32020 1.31562 1.27034 0.95571 1.05237 0.90678 0.84947 0.79232 0.74485 0.79738 1.18382 1.18926 1.17409 1.19866 0.98869 0.90917 1.37520 0.88383 1.17736 0.92624 0.91554 0.92020 1.21446 1.00310 0.96626 1.03196 1.18629 0.86318 0.96054 0.95988 1.91357 1.51145 1.97529 1.72820 1.21673 0.97106 0.96396 1.05302 1.66721 1.09810 1.29712 1.14236 1.19919 0.92089 0.90536 0.99571 1.86583 1.41969 1.30306 1.64280 1.24056 0.89196 0.74455 0.80184 1.93020 1.65513 1.83934 1.77361 1.93018 1.93158 1.76930 1.56612 0.88909 0.84569 0.82028 0.75461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.78 10.92 21.83 0.24 -38.54 14 2 C 0.03 1.52 5.18 85.25 0.44 1.97 14 3 Si 1.00 34.17 29.59 68.60 2.03 36.20 14 4 H -0.26 -8.64 7.11 99.48 0.71 -7.93 14 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 14 6 H -0.25 -8.29 7.11 99.48 0.71 -7.59 14 7 C -0.44 -22.20 8.75 23.39 0.20 -22.00 14 8 H 0.10 4.68 7.65 -2.91 -0.02 4.66 14 9 C 0.07 3.49 5.60 -21.10 -0.12 3.38 14 10 C -0.19 -9.89 8.78 22.94 0.20 -9.69 14 11 C 0.05 2.53 7.32 22.41 0.16 2.69 14 12 F -0.15 -6.77 17.28 44.97 0.78 -6.00 14 13 C -0.05 -2.36 11.16 84.82 0.95 -1.41 14 14 N -0.48 -24.02 8.07 -306.75 -2.47 -26.50 14 15 C 0.16 8.21 7.23 85.46 0.62 8.83 14 16 O -0.32 -13.98 9.70 -87.24 -0.85 -14.82 14 17 C 0.41 13.95 6.06 113.37 0.69 14.64 14 18 F -0.22 -8.30 16.57 44.97 0.75 -7.55 14 19 F -0.22 -8.08 16.57 44.97 0.75 -7.33 14 20 H 0.30 12.81 8.30 -92.71 -0.77 12.04 14 21 H 0.14 7.21 6.20 -2.91 -0.02 7.19 14 22 H 0.16 6.59 8.06 -2.91 -0.02 6.57 14 23 H 0.23 4.45 8.14 -2.39 -0.02 4.44 14 Total: -1.00 -60.32 228.45 5.63 -54.69 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.27 Total: 11.45 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 3.14 Total: -1.61 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -2.24 Total: -65.04 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.85 Total: -14.82 kcal Atomic # 9 Polarization: -23.15 SS G_CDS: 2.27 Total: -20.88 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Total: -60.32 5.63 -54.69 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238532666.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.581 kcal (2) G-P(sol) polarization free energy of solvation -60.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds