Wall clock time and date at job start Mon Mar 30 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86804 * 119.99842 * 2 1 4 4 H 1.48500 * 109.46776 * 269.99433 * 3 2 1 5 5 H 1.48498 * 109.47168 * 29.99418 * 3 2 1 6 6 H 1.48496 * 109.47206 * 150.00035 * 3 2 1 7 7 C 1.39996 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.41179 * 119.99729 * 0.02562 * 7 2 1 10 10 N 1.33714 * 119.75175 * 0.02562 * 9 7 2 11 11 C 1.31331 * 121.62535 * 179.72543 * 10 9 7 12 12 C 1.39396 * 120.92525 * 359.96869 * 11 10 9 13 13 O 1.35730 * 120.30096 * 180.02562 * 12 11 10 14 14 C 1.39831 * 119.40132 * 0.03183 * 12 11 10 15 15 F 1.35095 * 120.74556 * 179.97438 * 14 12 11 16 16 C 1.38110 * 118.50384 * 359.97438 * 14 12 11 17 17 C 1.50697 * 120.48193 * 180.02562 * 16 14 12 18 18 F 1.39897 * 109.47134 * 119.97968 * 17 16 14 19 19 F 1.39902 * 109.47394 * 239.98000 * 17 16 14 20 20 H 0.96991 * 120.00106 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.54019 * 179.97438 * 11 10 9 22 22 H 0.96700 * 113.99830 * 90.00098 * 13 12 11 23 23 H 1.09000 * 109.47116 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4894 2.0463 -1.4001 5 1 1.4392 2.6527 0.6999 6 1 3.5393 1.4403 0.7000 7 6 2.0078 -1.2124 0.0005 8 1 3.0878 -1.2123 0.0010 9 6 1.3019 -2.4350 0.0005 10 7 -0.0352 -2.4292 -0.0005 11 6 -0.7287 -3.5444 -0.0059 12 6 -0.0916 -4.7842 -0.0114 13 8 -0.8208 -5.9290 -0.0175 14 6 1.3057 -4.8380 -0.0105 15 9 1.9513 -6.0247 -0.0153 16 6 2.0109 -3.6505 -0.0047 17 6 3.5179 -3.6564 -0.0041 18 9 3.9873 -2.9938 -1.1433 19 9 3.9864 -3.0036 1.1412 20 1 -0.4850 0.8400 -0.0004 21 1 -1.8078 -3.5004 -0.0061 22 1 -1.0315 -6.2564 -0.9027 23 1 3.8772 -4.6854 -0.0083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238660832.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:24 Heat of formation + Delta-G solvation = -182.298105 kcal Electronic energy + Delta-G solvation = -16449.773492 eV Core-core repulsion = 13040.484612 eV Total energy + Delta-G solvation = -3409.288880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.08570 -49.68579 -47.74271 -40.41249 -37.94137 -35.48285 -33.23781 -31.29381 -28.20402 -26.60088 -23.77797 -22.94520 -20.05037 -19.26788 -18.92798 -18.05756 -17.75751 -17.41520 -16.92770 -16.77602 -16.52394 -15.40846 -15.08738 -14.86397 -14.71092 -14.16455 -14.08315 -13.87866 -13.52361 -13.07171 -12.85981 -12.80852 -12.06578 -12.03643 -11.66627 -11.26983 -10.28468 -9.81900 -9.66012 -8.58014 -6.80574 0.38687 0.53386 1.38183 1.46617 1.53183 2.15219 2.54753 2.97624 3.18028 3.34003 3.47726 3.76253 3.86529 4.15126 4.30641 4.38273 4.91187 5.01502 5.08044 5.23633 5.69065 6.00378 6.32080 6.59020 7.01081 7.79822 8.17248 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.011740 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.945402 B = 2384.353730 C = 3221.225040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.095 0.905 9 C 0.249 3.751 10 N -0.499 5.499 11 C 0.151 3.849 12 C -0.142 4.142 13 O -0.488 6.488 14 C 0.170 3.830 15 F -0.137 7.137 16 C -0.388 4.388 17 C 0.340 3.660 18 F -0.210 7.210 19 F -0.212 7.212 20 H 0.291 0.709 21 H 0.165 0.835 22 H 0.383 0.617 23 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -2.305 -1.678 3.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.203 4.203 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.441 4.441 8 H 0.113 0.887 9 C 0.128 3.872 10 N -0.212 5.212 11 C -0.020 4.020 12 C -0.192 4.192 13 O -0.295 6.295 14 C 0.145 3.855 15 F -0.116 7.116 16 C -0.395 4.395 17 C 0.287 3.713 18 F -0.191 7.191 19 F -0.193 7.193 20 H 0.103 0.897 21 H 0.182 0.818 22 H 0.237 0.763 23 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.473 -1.293 -1.053 2.225 hybrid contribution 0.696 -0.575 -0.523 1.044 sum 2.170 -1.868 -1.576 3.268 Atomic orbital electron populations 1.70149 1.08794 1.30561 1.24892 1.27084 0.95900 1.04786 0.92540 0.85109 0.79082 0.75162 0.80032 1.18118 1.18177 1.18192 1.20243 0.95506 0.90165 1.38217 0.88710 1.18486 0.88496 0.91494 0.88713 1.68829 1.06993 1.27021 1.18351 1.23481 1.00953 0.86620 0.90983 1.19010 0.87219 0.88176 1.24832 1.84824 1.72268 1.38612 1.33807 1.17958 0.90429 0.79349 0.97799 1.91380 1.81802 1.44731 1.93638 1.21024 0.95713 0.93799 1.28916 1.19817 0.88653 0.92178 0.70699 1.92923 1.89740 1.84299 1.52152 1.92926 1.89801 1.84732 1.51846 0.89730 0.81835 0.76281 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -35.91 11.45 21.83 0.25 -35.66 14 2 C 0.02 1.08 5.50 85.28 0.47 1.55 14 3 Si 0.99 36.01 29.56 68.60 2.03 38.04 14 4 H -0.26 -9.01 7.11 99.48 0.71 -8.30 14 5 H -0.26 -8.73 7.11 99.48 0.71 -8.03 14 6 H -0.26 -9.42 7.11 99.48 0.71 -8.72 14 7 C -0.41 -21.49 8.18 23.42 0.19 -21.30 14 8 H 0.09 4.83 5.49 -2.91 -0.02 4.81 14 9 C 0.25 13.20 6.54 40.18 0.26 13.46 14 10 N -0.50 -26.04 7.84 -188.71 -1.48 -27.52 14 11 C 0.15 6.84 11.14 85.05 0.95 7.78 14 12 C -0.14 -6.13 6.77 22.93 0.16 -5.97 14 13 O -0.49 -17.82 13.42 -90.53 -1.21 -19.04 14 14 C 0.17 7.62 7.32 22.63 0.17 7.78 14 15 F -0.14 -5.50 16.20 44.97 0.73 -4.77 14 16 C -0.39 -18.57 5.44 -19.29 -0.10 -18.68 14 17 C 0.34 14.33 4.92 71.24 0.35 14.68 14 18 F -0.21 -9.08 16.03 44.97 0.72 -8.36 14 19 F -0.21 -9.31 16.05 44.97 0.72 -8.59 14 20 H 0.29 12.77 8.29 -92.71 -0.77 12.00 14 21 H 0.16 6.32 8.06 -2.91 -0.02 6.30 14 22 H 0.38 10.05 9.06 -74.06 -0.67 9.38 14 23 H 0.13 4.50 7.21 -2.39 -0.02 4.48 14 Total: -1.00 -59.46 225.79 4.82 -54.65 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.62 Total: 11.93 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 2.44 Total: -0.69 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -1.23 Total: -63.18 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.21 Total: -19.04 kcal Atomic # 9 Polarization: -23.89 SS G_CDS: 2.17 Total: -21.71 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -59.46 4.82 -54.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238660832.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.652 kcal (2) G-P(sol) polarization free energy of solvation -59.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds