Wall clock time and date at job start Mon Mar 30 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86798 * 120.00029 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00160 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99720 * 3 2 1 7 7 C 1.40001 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00085 * 179.97438 * 7 2 1 9 9 C 1.41046 * 120.00271 * 0.02562 * 7 2 1 10 10 N 1.33708 * 119.77890 * 359.97438 * 9 7 2 11 11 C 1.31270 * 121.58660 * 180.02562 * 10 9 7 12 12 C 1.39595 * 120.97104 * 359.97438 * 11 10 9 13 13 O 1.35694 * 120.26418 * 180.02562 * 12 11 10 14 14 C 1.39418 * 119.47096 * 0.02562 * 12 11 10 15 15 C 1.50697 * 120.73471 * 179.97438 * 14 12 11 16 16 F 1.39906 * 109.47298 * 30.00143 * 15 14 12 17 17 F 1.39902 * 109.46894 * 149.99791 * 15 14 12 18 18 C 1.38212 * 118.53059 * 359.71919 * 14 12 11 19 19 F 1.35102 * 120.50161 * 180.28300 * 18 14 12 20 20 H 0.97000 * 119.99161 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.51705 * 180.02562 * 11 10 9 22 22 H 0.96694 * 114.00308 * 90.00414 * 13 12 11 23 23 H 1.08996 * 109.47675 * 269.99662 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 1.2772 2.7464 -0.0006 5 1 3.0958 1.6964 1.2124 6 1 3.0958 1.6962 -1.2125 7 6 2.0080 -1.2125 0.0005 8 1 3.0880 -1.2126 0.0001 9 6 1.3027 -2.4340 0.0005 10 7 -0.0344 -2.4288 0.0005 11 6 -0.7263 -3.5443 0.0010 12 6 -0.0878 -4.7857 0.0011 13 8 -0.8172 -5.9299 0.0011 14 6 1.3053 -4.8404 0.0011 15 6 2.0240 -6.1650 0.0017 16 9 1.2424 -7.1200 -0.6574 17 9 3.2504 -6.0304 -0.6579 18 6 2.0126 -3.6530 -0.0049 19 9 3.3636 -3.6597 -0.0108 20 1 -0.4849 0.8401 -0.0004 21 1 -1.8054 -3.5011 0.0006 22 1 -1.0286 -6.2616 -0.8823 23 1 2.1974 -6.4839 1.0294 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238661103.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:27 Heat of formation + Delta-G solvation = -180.636412 kcal Electronic energy + Delta-G solvation = -16350.831293 eV Core-core repulsion = 12941.614469 eV Total energy + Delta-G solvation = -3409.216824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.07504 -49.35855 -47.96426 -40.49434 -37.83813 -35.48745 -33.25749 -31.43557 -27.44986 -27.31522 -23.54429 -23.20047 -19.81567 -19.27026 -18.76320 -18.50239 -17.83432 -17.26884 -16.98673 -16.73358 -16.22709 -15.45696 -15.20104 -14.83237 -14.54897 -14.29315 -14.02972 -13.79349 -13.70300 -13.19486 -12.83821 -12.62782 -12.32410 -11.97983 -11.73257 -11.27956 -10.32427 -9.87033 -9.58333 -8.54576 -6.69113 0.37217 0.46344 1.39592 1.49402 1.52821 2.16439 2.55476 2.73734 3.12140 3.37283 3.49756 3.57023 3.86688 3.96489 4.13144 4.58335 4.85914 5.01838 5.15975 5.23704 5.63093 5.99860 6.37876 6.59438 7.00310 7.76066 8.21695 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.039335 B = 0.009053 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.662911 B = 3092.280016 C = 3759.697077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.024 3.976 3 Si 0.994 3.006 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.258 1.258 7 C -0.434 4.434 8 H 0.094 0.906 9 C 0.195 3.805 10 N -0.475 5.475 11 C 0.106 3.894 12 C -0.054 4.054 13 O -0.484 6.484 14 C -0.160 4.160 15 C 0.327 3.673 16 F -0.195 7.195 17 F -0.208 7.208 18 C -0.058 4.058 19 F -0.147 7.147 20 H 0.290 0.710 21 H 0.161 0.839 22 H 0.384 0.616 23 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -3.973 -0.126 4.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.201 4.201 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.182 1.182 7 C -0.464 4.464 8 H 0.112 0.888 9 C 0.071 3.929 10 N -0.189 5.189 11 C -0.062 4.062 12 C -0.104 4.104 13 O -0.292 6.292 14 C -0.168 4.168 15 C 0.273 3.727 16 F -0.176 7.176 17 F -0.189 7.189 18 C -0.083 4.083 19 F -0.126 7.126 20 H 0.101 0.899 21 H 0.178 0.822 22 H 0.240 0.760 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.114 -3.012 0.452 3.048 hybrid contribution 0.863 -0.420 -0.679 1.176 sum 0.977 -3.431 -0.227 3.575 Atomic orbital electron populations 1.70153 1.08844 1.30480 1.25937 1.27039 0.95898 1.04623 0.92516 0.85074 0.78700 0.74672 0.80320 1.18358 1.18132 1.18246 1.19998 0.95385 0.90260 1.40769 0.88837 1.19064 0.89231 0.91711 0.92895 1.68866 1.05762 1.26932 1.17292 1.23547 1.00949 0.87295 0.94385 1.18516 0.87235 0.87408 1.17221 1.84747 1.72171 1.38426 1.33867 1.21068 0.95440 0.93624 1.06644 1.20214 0.74394 0.84143 0.93902 1.92926 1.75233 1.65400 1.84014 1.92981 1.45323 1.96333 1.84247 1.18444 0.77100 0.94362 1.18349 1.91314 1.28980 1.97285 1.95018 0.89856 0.82151 0.76031 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.61 11.45 21.84 0.25 -36.36 14 2 C 0.02 1.14 5.50 85.27 0.47 1.60 14 3 Si 0.99 35.61 29.56 68.60 2.03 37.64 14 4 H -0.26 -8.63 7.11 99.48 0.71 -7.92 14 5 H -0.26 -8.99 7.11 99.48 0.71 -8.28 14 6 H -0.26 -9.07 7.11 99.48 0.71 -8.36 14 7 C -0.43 -22.81 8.98 23.39 0.21 -22.60 14 8 H 0.09 4.72 7.41 -2.91 -0.02 4.70 14 9 C 0.20 10.52 6.56 40.24 0.26 10.78 14 10 N -0.47 -24.94 7.84 -188.42 -1.48 -26.42 14 11 C 0.11 4.76 11.14 85.10 0.95 5.71 14 12 C -0.05 -2.28 6.66 22.88 0.15 -2.13 14 13 O -0.48 -17.00 11.75 -90.14 -1.06 -18.06 14 14 C -0.16 -7.00 5.77 -19.59 -0.11 -7.11 14 15 C 0.33 11.80 5.56 71.24 0.40 12.20 14 16 F -0.19 -6.63 15.25 44.97 0.69 -5.94 14 17 F -0.21 -8.10 15.59 44.97 0.70 -7.40 14 18 C -0.06 -2.90 7.17 22.96 0.16 -2.73 14 19 F -0.15 -7.19 14.84 44.97 0.67 -6.52 14 20 H 0.29 12.86 8.29 -92.71 -0.77 12.09 14 21 H 0.16 6.26 8.06 -2.91 -0.02 6.24 14 22 H 0.38 10.50 8.75 -74.06 -0.65 9.85 14 23 H 0.15 4.34 8.14 -2.39 -0.02 4.32 14 Total: -1.00 -59.62 225.59 4.93 -54.70 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.64 Total: 12.63 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 2.49 Total: -4.28 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -1.23 Total: -62.78 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.06 Total: -18.06 kcal Atomic # 9 Polarization: -21.91 SS G_CDS: 2.05 Total: -19.85 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -59.62 4.93 -54.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238661103.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.937 kcal (2) G-P(sol) polarization free energy of solvation -59.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds