Wall clock time and date at job start Mon Mar 30 2020 03:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86801 * 119.99797 * 2 1 4 4 H 1.48495 * 109.47320 * 275.61449 * 3 2 1 5 5 H 1.48500 * 109.46880 * 35.61117 * 3 2 1 6 6 H 1.48503 * 109.46821 * 155.60969 * 3 2 1 7 7 C 1.40047 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00067 * 337.13718 * 7 2 1 9 9 C 1.41215 * 120.00194 * 157.14110 * 7 2 1 10 10 C 1.41686 * 121.05123 * 320.33942 * 9 7 2 11 11 O 1.35681 * 120.62247 * 359.97438 * 10 9 7 12 12 C 1.38461 * 118.74925 * 179.97438 * 10 9 7 13 13 N 1.31919 * 120.92057 * 0.02562 * 12 10 9 14 14 C 1.32251 * 122.38036 * 359.97438 * 13 12 10 15 15 F 1.35106 * 119.43140 * 179.72410 * 14 13 12 16 16 C 1.37861 * 121.13492 * 359.97438 * 14 13 12 17 17 C 1.50703 * 120.53584 * 179.97438 * 16 14 13 18 18 F 1.39900 * 109.47242 * 120.00337 * 17 16 14 19 19 F 1.39905 * 109.46767 * 239.99870 * 17 16 14 20 20 H 0.96994 * 120.00004 * 359.97438 * 1 2 3 21 21 H 0.96701 * 113.99811 * 264.89377 * 11 10 9 22 22 H 1.07997 * 119.53302 * 179.97438 * 12 10 9 23 23 H 1.09001 * 109.47384 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.3705 2.1150 -1.3933 5 1 1.5033 2.6155 0.8152 6 1 3.5935 1.4089 0.5782 7 6 2.0080 -1.2128 -0.0005 8 1 1.5316 -2.1116 0.3624 9 6 3.3369 -1.2607 -0.4756 10 6 3.7323 -0.5194 -1.6165 11 8 2.8386 0.2557 -2.2809 12 6 5.0479 -0.6010 -2.0407 13 7 5.9214 -1.3532 -1.3993 14 6 5.5966 -2.0614 -0.3307 15 9 6.5382 -2.8162 0.2768 16 6 4.3126 -2.0467 0.1709 17 6 3.9572 -2.8595 1.3892 18 9 3.4974 -2.0083 2.3998 19 9 2.9541 -3.7778 1.0607 20 1 -0.4850 0.8400 0.0004 21 1 2.4273 -0.1804 -3.0397 22 1 5.3629 -0.0416 -2.9091 23 1 4.8397 -3.3955 1.7386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238664847.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:33 Heat of formation + Delta-G solvation = -160.630665 kcal Electronic energy + Delta-G solvation = -16733.654525 eV Core-core repulsion = 13325.305216 eV Total energy + Delta-G solvation = -3408.349309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.42285 -47.95086 -46.01893 -39.11847 -36.14013 -34.09363 -32.05294 -29.43928 -26.81304 -24.88422 -21.90782 -21.29499 -18.42792 -17.62416 -17.26076 -16.45614 -16.34454 -15.79128 -15.44739 -15.11818 -14.78709 -14.20919 -13.39841 -13.06650 -12.88660 -12.72695 -12.42104 -12.08508 -11.93943 -11.66085 -11.22100 -10.94799 -10.52102 -10.23412 -10.07332 -9.36040 -8.64079 -8.43881 -7.89453 -7.23290 -5.00229 1.75224 2.20382 3.10695 3.22121 3.30156 3.98734 4.14248 4.44635 4.64684 4.73834 5.08138 5.17777 5.57841 5.71997 5.96088 6.01377 6.50447 6.63562 6.71928 7.15724 7.43483 7.89709 8.02682 8.33809 8.51933 8.72423 9.71126 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.015060 C = 0.011127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.472353 B = 1858.749203 C = 2515.799393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.103 3.897 3 Si 0.928 3.072 4 H -0.234 1.234 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.409 4.409 8 H 0.108 0.892 9 C 0.117 3.883 10 C -0.064 4.064 11 O -0.471 6.471 12 C 0.130 3.870 13 N -0.591 5.591 14 C 0.346 3.654 15 F -0.133 7.133 16 C -0.339 4.339 17 C 0.341 3.659 18 F -0.200 7.200 19 F -0.206 7.206 20 H 0.293 0.707 21 H 0.360 0.640 22 H 0.145 0.855 23 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -0.393 -1.053 3.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.123 4.123 3 Si 0.754 3.246 4 H -0.159 1.159 5 H -0.220 1.220 6 H -0.184 1.184 7 C -0.436 4.436 8 H 0.126 0.874 9 C 0.109 3.891 10 C -0.113 4.113 11 O -0.279 6.279 12 C -0.020 4.020 13 N -0.313 5.313 14 C 0.195 3.805 15 F -0.113 7.113 16 C -0.347 4.347 17 C 0.287 3.713 18 F -0.181 7.181 19 F -0.188 7.188 20 H 0.104 0.896 21 H 0.215 0.785 22 H 0.163 0.837 23 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.159 0.051 -0.897 4.255 hybrid contribution -0.716 0.158 0.058 0.736 sum 3.442 0.209 -0.839 3.549 Atomic orbital electron populations 1.69679 1.08709 1.31451 1.29480 1.26287 0.94622 1.02438 0.88956 0.85913 0.80162 0.78568 0.79980 1.15856 1.22009 1.18358 1.19596 0.93847 0.97534 1.32626 0.87401 1.17686 0.92671 0.88222 0.90553 1.19479 0.90067 1.05088 0.96698 1.85130 1.57888 1.39172 1.45756 1.22222 0.88810 0.93742 0.97251 1.66811 1.38251 1.14969 1.11297 1.17500 0.82893 0.89973 0.90145 1.91481 1.65644 1.73126 1.81016 1.20703 0.93345 1.16701 1.03934 1.19653 0.86329 0.81359 0.83963 1.92964 1.90895 1.72632 1.61654 1.92941 1.65201 1.67346 1.93266 0.89640 0.78458 0.83736 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.14 13.92 55.55 0.77 -18.37 14 2 C 0.10 2.54 4.89 -17.33 -0.08 2.46 14 3 Si 0.93 20.85 24.69 -169.99 -4.20 16.66 14 4 H -0.23 -5.06 6.03 56.52 0.34 -4.71 14 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 14 6 H -0.26 -6.27 7.11 56.52 0.40 -5.87 14 7 C -0.41 -10.46 8.09 -37.77 -0.31 -10.77 14 8 H 0.11 2.96 6.76 -52.49 -0.35 2.60 14 9 C 0.12 2.83 4.77 -106.41 -0.51 2.32 14 10 C -0.06 -1.42 5.31 -38.18 -0.20 -1.62 14 11 O -0.47 -9.52 8.45 -18.75 -0.16 -9.67 14 12 C 0.13 2.69 11.13 -17.43 -0.19 2.50 14 13 N -0.59 -13.12 10.34 -13.63 -0.14 -13.26 14 14 C 0.35 7.69 8.34 -17.51 -0.15 7.54 14 15 F -0.13 -2.69 16.20 2.25 0.04 -2.65 14 16 C -0.34 -7.80 5.44 -103.72 -0.56 -8.36 14 17 C 0.34 7.16 5.03 36.01 0.18 7.34 14 18 F -0.20 -4.49 16.66 2.25 0.04 -4.45 14 19 F -0.21 -4.51 15.87 2.25 0.04 -4.47 14 20 H 0.29 6.54 8.29 -40.82 -0.34 6.21 14 21 H 0.36 5.79 9.06 45.56 0.41 6.20 14 22 H 0.15 2.49 8.06 -52.49 -0.42 2.07 14 23 H 0.10 1.73 7.13 -51.93 -0.37 1.36 14 LS Contribution 218.68 15.07 3.30 3.30 Total: -1.00 -27.52 218.68 -2.07 -29.59 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 0.07 Total: 1.93 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.82 Total: 1.40 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.63 Total: -31.63 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.16 Total: -9.67 kcal Atomic # 9 Polarization: -11.68 SS G_CDS: 0.11 Total: -11.57 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.20 Total: 16.66 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.52 -2.07 -29.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238664847.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.041 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds