Wall clock time and date at job start Mon Mar 30 2020 03:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86801 * 119.99797 * 2 1 4 4 H 1.48495 * 109.47320 * 275.61449 * 3 2 1 5 5 H 1.48500 * 109.46880 * 35.61117 * 3 2 1 6 6 H 1.48503 * 109.46821 * 155.60969 * 3 2 1 7 7 C 1.40047 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00067 * 337.13718 * 7 2 1 9 9 C 1.41215 * 120.00194 * 157.14110 * 7 2 1 10 10 C 1.41686 * 121.05123 * 320.33942 * 9 7 2 11 11 O 1.35681 * 120.62247 * 359.97438 * 10 9 7 12 12 C 1.38461 * 118.74925 * 179.97438 * 10 9 7 13 13 N 1.31919 * 120.92057 * 0.02562 * 12 10 9 14 14 C 1.32251 * 122.38036 * 359.97438 * 13 12 10 15 15 F 1.35106 * 119.43140 * 179.72410 * 14 13 12 16 16 C 1.37861 * 121.13492 * 359.97438 * 14 13 12 17 17 C 1.50703 * 120.53584 * 179.97438 * 16 14 13 18 18 F 1.39900 * 109.47242 * 120.00337 * 17 16 14 19 19 F 1.39905 * 109.46767 * 239.99870 * 17 16 14 20 20 H 0.96994 * 120.00004 * 359.97438 * 1 2 3 21 21 H 0.96701 * 113.99811 * 264.89377 * 11 10 9 22 22 H 1.07997 * 119.53302 * 179.97438 * 12 10 9 23 23 H 1.09001 * 109.47384 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.3705 2.1150 -1.3933 5 1 1.5033 2.6155 0.8152 6 1 3.5935 1.4089 0.5782 7 6 2.0080 -1.2128 -0.0005 8 1 1.5316 -2.1116 0.3624 9 6 3.3369 -1.2607 -0.4756 10 6 3.7323 -0.5194 -1.6165 11 8 2.8386 0.2557 -2.2809 12 6 5.0479 -0.6010 -2.0407 13 7 5.9214 -1.3532 -1.3993 14 6 5.5966 -2.0614 -0.3307 15 9 6.5382 -2.8162 0.2768 16 6 4.3126 -2.0467 0.1709 17 6 3.9572 -2.8595 1.3892 18 9 3.4974 -2.0083 2.3998 19 9 2.9541 -3.7778 1.0607 20 1 -0.4850 0.8400 0.0004 21 1 2.4273 -0.1804 -3.0397 22 1 5.3629 -0.0416 -2.9091 23 1 4.8397 -3.3955 1.7386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238664847.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:33 Heat of formation + Delta-G solvation = -180.386697 kcal Electronic energy + Delta-G solvation = -16734.511211 eV Core-core repulsion = 13325.305216 eV Total energy + Delta-G solvation = -3409.205995 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.10112 -49.65828 -47.75036 -40.84668 -37.79659 -35.89935 -33.83759 -31.18081 -28.57213 -26.62927 -23.66789 -23.01589 -20.22353 -19.27630 -18.98178 -18.19795 -18.07044 -17.50088 -17.16120 -16.80883 -16.55414 -15.86884 -15.14223 -14.79008 -14.58391 -14.46092 -14.16054 -13.85959 -13.67057 -13.42159 -13.05167 -12.67847 -12.25599 -11.93767 -11.82936 -11.14149 -10.44065 -10.17871 -9.59897 -9.06222 -6.87296 0.03123 0.40156 1.34134 1.42403 1.51992 2.18741 2.38532 2.74058 2.94476 3.03488 3.40815 3.50337 3.96555 4.04519 4.26202 4.32678 4.82790 4.91409 4.95569 5.38641 5.72263 6.01058 6.19812 6.49374 6.87996 7.08095 7.94957 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.015060 C = 0.011127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.472353 B = 1858.749203 C = 2515.799393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.082 3.918 3 Si 0.969 3.031 4 H -0.217 1.217 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.442 4.442 8 H 0.076 0.924 9 C 0.105 3.895 10 C -0.064 4.064 11 O -0.475 6.475 12 C 0.137 3.863 13 N -0.592 5.592 14 C 0.344 3.656 15 F -0.121 7.121 16 C -0.352 4.352 17 C 0.335 3.665 18 F -0.211 7.211 19 F -0.214 7.214 20 H 0.303 0.697 21 H 0.383 0.617 22 H 0.187 0.813 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 0.287 -2.000 5.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.141 4.141 3 Si 0.793 3.207 4 H -0.141 1.141 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.470 4.470 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.112 4.112 11 O -0.286 6.286 12 C -0.014 4.014 13 N -0.314 5.314 14 C 0.192 3.808 15 F -0.100 7.100 16 C -0.360 4.360 17 C 0.281 3.719 18 F -0.193 7.193 19 F -0.196 7.196 20 H 0.114 0.886 21 H 0.240 0.760 22 H 0.203 0.797 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.497 0.722 -1.859 5.847 hybrid contribution -1.002 -0.127 0.295 1.052 sum 4.495 0.595 -1.564 4.796 Atomic orbital electron populations 1.69672 1.09360 1.32530 1.31116 1.26701 0.94988 1.03776 0.88592 0.85354 0.77851 0.76751 0.80701 1.14073 1.20945 1.21096 1.19402 0.94990 0.97081 1.35523 0.90621 1.18002 0.92420 0.88783 0.91120 1.19563 0.91060 1.04415 0.96204 1.85024 1.57745 1.39209 1.46618 1.22794 0.87895 0.92957 0.97765 1.66932 1.38639 1.14737 1.11056 1.17533 0.82878 0.90134 0.90289 1.91506 1.64990 1.72725 1.80770 1.21014 0.93704 1.16620 1.04637 1.20065 0.87202 0.81258 0.83330 1.92936 1.91160 1.73173 1.61985 1.92920 1.65840 1.67461 1.93345 0.88636 0.75978 0.79661 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.17 13.92 21.84 0.30 -39.87 14 2 C 0.08 4.07 4.89 85.29 0.42 4.48 14 3 Si 0.97 41.92 24.69 68.60 1.69 43.62 14 4 H -0.22 -8.68 6.03 99.48 0.60 -8.08 14 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 14 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 14 7 C -0.44 -22.94 8.09 23.44 0.19 -22.75 14 8 H 0.08 4.33 6.76 -2.91 -0.02 4.31 14 9 C 0.10 5.00 4.77 -21.02 -0.10 4.90 14 10 C -0.06 -2.66 5.31 23.18 0.12 -2.54 14 11 O -0.48 -17.91 8.45 -89.99 -0.76 -18.67 14 12 C 0.14 5.17 11.13 84.73 0.94 6.11 14 13 N -0.59 -24.43 10.34 -197.05 -2.04 -26.46 14 14 C 0.34 14.45 8.34 84.54 0.71 15.16 14 15 F -0.12 -4.54 16.20 44.97 0.73 -3.81 14 16 C -0.35 -15.80 5.44 -19.28 -0.10 -15.90 14 17 C 0.34 13.81 5.03 71.24 0.36 14.17 14 18 F -0.21 -9.47 16.66 44.97 0.75 -8.72 14 19 F -0.21 -9.41 15.87 44.97 0.71 -8.69 14 20 H 0.30 13.50 8.29 -92.71 -0.77 12.73 14 21 H 0.38 11.20 9.06 -74.06 -0.67 10.53 14 22 H 0.19 5.45 8.06 -2.91 -0.02 5.43 14 23 H 0.14 4.58 7.13 -2.39 -0.02 4.56 14 Total: -1.00 -57.59 218.68 4.44 -53.15 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.51 Total: 5.83 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 2.53 Total: 3.63 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -1.73 Total: -66.33 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.76 Total: -18.67 kcal Atomic # 9 Polarization: -23.41 SS G_CDS: 2.19 Total: -21.22 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.69 Total: 43.62 kcal Total: -57.59 4.44 -53.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238664847.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.238 kcal (2) G-P(sol) polarization free energy of solvation -57.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds