Wall clock time and date at job start Mon Mar 30 2020 03:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86803 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47056 * 300.00008 * 3 2 1 6 6 H 1.48500 * 109.47223 * 59.99450 * 3 2 1 7 7 C 1.39931 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00099 * 155.50715 * 7 2 1 9 9 C 1.41279 * 120.00000 * 335.49978 * 7 2 1 10 10 C 1.41140 * 120.64691 * 321.99441 * 9 7 2 11 11 F 1.35101 * 119.77929 * 359.97438 * 10 9 7 12 12 N 1.31687 * 120.43936 * 179.97438 * 10 9 7 13 13 C 1.32072 * 121.99878 * 359.97438 * 12 10 9 14 14 C 1.39091 * 121.28017 * 359.97438 * 13 12 10 15 15 O 1.35948 * 120.30510 * 180.02562 * 14 13 12 16 16 C 1.38489 * 119.38568 * 359.80851 * 14 13 12 17 17 C 1.50707 * 120.90323 * 180.23294 * 16 14 13 18 18 F 1.39903 * 109.47184 * 24.50980 * 17 16 14 19 19 F 1.39905 * 109.46720 * 144.50592 * 17 16 14 20 20 H 0.96996 * 119.99614 * 177.88901 * 1 2 3 21 21 H 1.07999 * 119.35925 * 180.02562 * 13 12 10 22 22 H 0.96700 * 113.99713 * 90.00073 * 15 14 13 23 23 H 1.08994 * 109.47270 * 264.50463 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3465 -0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8835 2.3966 1.2124 7 6 2.0082 -1.2118 -0.0005 8 1 3.0153 -1.2537 -0.3883 9 6 1.3973 -2.3805 0.5063 10 6 0.5633 -2.3211 1.6435 11 9 0.3462 -1.1362 2.2552 12 7 -0.0044 -3.4129 2.1122 13 6 0.1772 -4.5935 1.5485 14 6 0.9826 -4.7407 0.4241 15 8 1.1554 -5.9653 -0.1404 16 6 1.6033 -3.6275 -0.1176 17 6 2.4790 -3.7469 -1.3383 18 9 2.1056 -4.8785 -2.0713 19 9 2.3285 -2.6057 -2.1336 20 1 -0.4849 -0.8395 -0.0309 21 1 -0.3097 -5.4612 1.9683 22 1 0.5053 -6.1786 -0.8237 23 1 3.5204 -3.8405 -1.0306 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238665371.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:36 Heat of formation + Delta-G solvation = -166.727183 kcal Electronic energy + Delta-G solvation = -16731.159373 eV Core-core repulsion = 13322.545698 eV Total energy + Delta-G solvation = -3408.613674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.19786 -47.53567 -46.19291 -39.04957 -36.37000 -34.47061 -31.74873 -28.85721 -26.41059 -25.07962 -22.02966 -21.32409 -18.73780 -17.28109 -17.11657 -16.88722 -16.68138 -15.61859 -14.92533 -14.61317 -14.54497 -14.18458 -13.44385 -13.12471 -12.79060 -12.58898 -12.37026 -12.32341 -11.95199 -11.50083 -11.22828 -10.76093 -10.56480 -10.48734 -10.31397 -9.34250 -8.74856 -8.45800 -7.74262 -7.59322 -4.91920 1.91503 2.15970 3.05179 3.13272 3.23892 3.83111 4.21492 4.50599 4.64810 4.84079 4.91851 5.18012 5.42657 5.70125 6.00129 6.25634 6.59420 6.68044 7.01446 7.21202 7.44326 7.59029 7.98551 8.19070 8.33641 8.86152 9.70409 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028260 B = 0.012936 C = 0.009379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.548841 B = 2163.976180 C = 2984.553468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.035 3.965 3 Si 1.079 2.921 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.471 4.471 8 H 0.096 0.904 9 C 0.057 3.943 10 C 0.195 3.805 11 F -0.119 7.119 12 N -0.465 5.465 13 C -0.048 4.048 14 C 0.122 3.878 15 O -0.497 6.497 16 C -0.272 4.272 17 C 0.342 3.658 18 F -0.211 7.211 19 F -0.192 7.192 20 H 0.295 0.705 21 H 0.142 0.858 22 H 0.384 0.616 23 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -2.954 -2.493 5.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.191 4.191 3 Si 0.901 3.099 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.498 4.498 8 H 0.113 0.887 9 C 0.049 3.951 10 C 0.032 3.968 11 F -0.098 7.098 12 N -0.180 5.180 13 C -0.201 4.201 14 C 0.076 3.924 15 O -0.306 6.306 16 C -0.280 4.280 17 C 0.289 3.711 18 F -0.192 7.192 19 F -0.173 7.173 20 H 0.108 0.892 21 H 0.160 0.840 22 H 0.240 0.760 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.923 -1.318 -1.420 3.507 hybrid contribution 0.061 -1.680 -0.989 1.951 sum 2.984 -2.999 -2.409 4.868 Atomic orbital electron populations 1.70412 1.08201 1.34052 1.24833 1.27253 0.95502 1.04802 0.91499 0.83420 0.75320 0.72683 0.78501 1.19725 1.19897 1.19444 1.20685 1.02729 0.92733 1.33617 0.88655 1.17817 0.92647 0.93211 0.91377 1.18383 1.04340 0.80950 0.93077 1.91503 1.93674 1.42205 1.82425 1.66355 1.21156 0.98552 1.31930 1.21644 1.06120 0.93390 0.98939 1.18926 0.95879 0.83428 0.94203 1.84722 1.57131 1.31701 1.57016 1.20612 1.12349 0.94487 1.00568 1.19626 0.98303 0.70737 0.82444 1.92878 1.93741 1.52850 1.79748 1.93001 1.97215 1.51257 1.75849 0.89224 0.84049 0.76022 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.58 12.23 55.55 0.68 -18.90 14 2 C 0.03 0.84 4.35 -17.34 -0.08 0.77 14 3 Si 1.08 20.77 30.00 -169.99 -5.10 15.67 14 4 H -0.27 -4.90 7.11 56.52 0.40 -4.50 14 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 14 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 7 C -0.47 -11.59 6.88 -37.79 -0.26 -11.85 14 8 H 0.10 2.24 7.24 -52.49 -0.38 1.86 14 9 C 0.06 1.42 4.98 -106.61 -0.53 0.89 14 10 C 0.19 5.05 7.29 -16.51 -0.12 4.93 14 11 F -0.12 -3.16 14.61 2.25 0.03 -3.12 14 12 N -0.47 -11.50 10.34 -12.72 -0.13 -11.63 14 13 C -0.05 -1.05 11.13 -17.13 -0.19 -1.24 14 14 C 0.12 2.61 6.63 -39.17 -0.26 2.35 14 15 O -0.50 -9.01 11.59 -19.58 -0.23 -9.24 14 16 C -0.27 -6.20 5.82 -103.50 -0.60 -6.80 14 17 C 0.34 6.89 5.29 36.01 0.19 7.08 14 18 F -0.21 -4.00 15.02 2.25 0.03 -3.97 14 19 F -0.19 -4.19 14.83 2.25 0.03 -4.16 14 20 H 0.29 7.98 6.95 -40.82 -0.28 7.70 14 21 H 0.14 2.68 8.06 -52.49 -0.42 2.26 14 22 H 0.38 5.43 8.75 45.56 0.40 5.83 14 23 H 0.10 1.73 8.14 -51.93 -0.42 1.30 14 LS Contribution 221.44 15.07 3.34 3.34 Total: -1.00 -27.78 221.44 -3.09 -30.88 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.09 Total: 5.01 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.85 Total: -3.87 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.55 Total: -30.53 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.23 Total: -9.24 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 0.10 Total: -11.25 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.10 Total: 15.67 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -27.78 -3.09 -30.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238665371.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.849 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds