Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86802 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47308 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46880 * 300.00278 * 3 2 1 6 6 H 1.48500 * 109.47033 * 59.99891 * 3 2 1 7 7 C 1.39879 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00232 * 161.15690 * 7 2 1 9 9 C 1.41160 * 120.00187 * 341.15319 * 7 2 1 10 10 C 1.41137 * 120.60741 * 322.72781 * 9 7 2 11 11 F 1.35100 * 119.86080 * 0.29645 * 10 9 7 12 12 N 1.31722 * 120.26906 * 180.02562 * 10 9 7 13 13 C 1.32572 * 121.72099 * 359.97438 * 12 10 9 14 14 O 1.35493 * 119.38576 * 180.02562 * 13 12 10 15 15 C 1.39391 * 121.23473 * 359.97438 * 13 12 10 16 16 C 1.36732 * 119.57985 * 0.02562 * 15 13 12 17 17 C 1.50693 * 120.79534 * 180.02562 * 16 15 13 18 18 F 1.39911 * 109.46991 * 22.36756 * 17 16 15 19 19 F 1.39905 * 109.47195 * 142.35912 * 17 16 15 20 20 H 0.97005 * 119.99672 * 359.97438 * 1 2 3 21 21 H 0.96704 * 113.99648 * 89.99235 * 14 13 12 22 22 H 1.07999 * 120.20609 * 180.02562 * 15 13 12 23 23 H 1.08997 * 109.48014 * 262.36504 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3464 -0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0451 -1.2364 -0.3026 9 6 1.3594 -2.4013 0.3938 10 6 0.4201 -2.3923 1.4472 11 9 0.1326 -1.2351 2.0823 12 7 -0.1813 -3.5067 1.8101 13 6 0.0686 -4.6614 1.2086 14 8 -0.5776 -5.7789 1.6200 15 6 0.9831 -4.7471 0.1600 16 6 1.6371 -3.6218 -0.2589 17 6 2.6307 -3.6830 -1.3902 18 9 2.3699 -4.8083 -2.1795 19 9 2.5184 -2.5286 -2.1725 20 1 -0.4850 0.8401 0.0004 21 1 -1.4128 -5.9418 1.1607 22 1 1.1737 -5.6964 -0.3185 23 1 3.6401 -3.7500 -0.9842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238666606.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = -176.737358 kcal Electronic energy + Delta-G solvation = -16497.542613 eV Core-core repulsion = 13088.494865 eV Total energy + Delta-G solvation = -3409.047748 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.72836 -49.24188 -47.73009 -40.68520 -37.77874 -35.71258 -33.88247 -31.26902 -27.97123 -26.75360 -23.83655 -22.82649 -19.86372 -19.57669 -18.65242 -18.18800 -17.77387 -17.15501 -16.92022 -16.57792 -16.21878 -15.78334 -15.33837 -14.57722 -14.26403 -14.15958 -14.04410 -13.73089 -13.31780 -13.13288 -12.89466 -12.65086 -12.28185 -12.10308 -11.93539 -11.15988 -10.56770 -10.34103 -9.39529 -8.88942 -6.60473 0.37711 0.40297 1.39339 1.45662 1.56444 2.15369 2.41657 2.77615 3.08674 3.17972 3.50470 3.58079 4.20666 4.23223 4.31347 4.62548 4.94281 5.05556 5.18051 5.33257 5.72641 6.06876 6.40183 6.57965 6.90476 7.16447 8.12055 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.024495 B = 0.013069 C = 0.008950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.807815 B = 2141.902159 C = 3127.694728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.243 1.243 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.444 4.444 8 H 0.110 0.890 9 C 0.048 3.952 10 C 0.219 3.781 11 F -0.126 7.126 12 N -0.532 5.532 13 C 0.176 3.824 14 O -0.484 6.484 15 C -0.106 4.106 16 C -0.227 4.227 17 C 0.338 3.662 18 F -0.209 7.209 19 F -0.202 7.202 20 H 0.297 0.703 21 H 0.396 0.604 22 H 0.155 0.845 23 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 -2.496 -3.136 6.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.187 4.187 3 Si 0.806 3.194 4 H -0.166 1.166 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.472 4.472 8 H 0.128 0.872 9 C 0.041 3.959 10 C 0.059 3.941 11 F -0.105 7.105 12 N -0.256 5.256 13 C 0.000 4.000 14 O -0.290 6.290 15 C -0.127 4.127 16 C -0.235 4.235 17 C 0.285 3.715 18 F -0.191 7.191 19 F -0.183 7.183 20 H 0.107 0.893 21 H 0.253 0.747 22 H 0.172 0.828 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.295 -2.456 -2.145 5.392 hybrid contribution -0.377 0.888 -0.658 1.167 sum 3.918 -1.568 -2.802 5.066 Atomic orbital electron populations 1.69826 1.09707 1.32049 1.30704 1.26872 0.95365 1.05233 0.91193 0.85060 0.80081 0.75444 0.78824 1.16566 1.18869 1.19388 1.19836 0.99437 0.90835 1.37047 0.87233 1.18092 0.92114 0.94714 0.90993 1.18058 1.01856 0.79810 0.94361 1.91414 1.92812 1.45324 1.80961 1.65721 1.27959 0.99673 1.32244 1.18119 1.00626 0.83971 0.97243 1.84720 1.39966 1.37524 1.66794 1.21275 0.96653 0.99292 0.95498 1.20349 1.07164 0.94295 1.01687 1.20059 0.99750 0.70351 0.81343 1.92915 1.96137 1.53020 1.77006 1.92985 1.97606 1.50952 1.76807 0.89258 0.74729 0.82751 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.90 11.10 21.82 0.24 -40.66 14 2 C 0.03 1.55 4.55 85.23 0.39 1.94 14 3 Si 0.99 35.83 29.60 68.60 2.03 37.86 14 4 H -0.24 -8.22 7.11 99.48 0.71 -7.51 14 5 H -0.26 -9.22 7.11 99.48 0.71 -8.51 14 6 H -0.27 -9.74 7.11 99.48 0.71 -9.03 14 7 C -0.44 -21.41 6.98 23.39 0.16 -21.25 14 8 H 0.11 4.81 7.20 -2.91 -0.02 4.79 14 9 C 0.05 2.38 5.38 -21.13 -0.11 2.27 14 10 C 0.22 11.82 7.84 85.42 0.67 12.49 14 11 F -0.13 -6.99 14.32 44.97 0.64 -6.35 14 12 N -0.53 -27.67 10.39 -307.51 -3.19 -30.86 14 13 C 0.18 7.91 7.74 84.86 0.66 8.56 14 14 O -0.48 -18.28 13.54 -87.94 -1.19 -19.47 14 15 C -0.11 -4.33 9.34 22.19 0.21 -4.13 14 16 C -0.23 -9.81 5.77 -19.50 -0.11 -9.92 14 17 C 0.34 12.03 5.28 71.23 0.38 12.41 14 18 F -0.21 -7.09 16.34 44.97 0.73 -6.36 14 19 F -0.20 -8.20 14.96 44.97 0.67 -7.53 14 20 H 0.30 13.78 8.30 -92.70 -0.77 13.01 14 21 H 0.40 10.89 9.06 -74.05 -0.67 10.22 14 22 H 0.15 5.24 7.47 -2.91 -0.02 5.22 14 23 H 0.15 4.04 8.14 -2.39 -0.02 4.02 14 Total: -1.00 -61.57 224.62 2.79 -58.78 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.62 Total: 12.20 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 2.24 Total: 2.38 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -2.95 Total: -71.52 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -1.19 Total: -19.47 kcal Atomic # 9 Polarization: -22.28 SS G_CDS: 2.05 Total: -20.23 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -61.57 2.79 -58.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238666606.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.957 kcal (2) G-P(sol) polarization free energy of solvation -61.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds