Wall clock time and date at job start Mon Mar 30 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48505 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47177 * 299.99646 * 3 2 1 6 6 H 1.48495 * 109.47329 * 59.99768 * 3 2 1 7 7 C 1.39987 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.41119 * 120.00039 * 0.02562 * 7 2 1 10 10 N 1.33774 * 119.73971 * 345.22625 * 9 7 2 11 11 C 1.31432 * 121.53375 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.58198 * 179.97438 * 11 10 9 13 13 C 1.39914 * 120.83548 * 0.25757 * 11 10 9 14 14 O 1.35705 * 120.30075 * 179.72367 * 13 11 10 15 15 C 1.39434 * 119.39902 * 359.51171 * 13 11 10 16 16 C 1.37971 * 118.58422 * 0.48117 * 15 13 11 17 17 C 1.50693 * 120.43989 * 179.76781 * 16 15 13 18 18 F 1.39910 * 109.46883 * 19.72637 * 17 16 15 19 19 F 1.39898 * 109.47278 * 139.72379 * 17 16 15 20 20 H 0.97002 * 119.99571 * 0.02562 * 1 2 3 21 21 H 0.96698 * 113.99813 * 89.99444 * 14 13 11 22 22 H 1.08001 * 120.70746 * 180.24297 * 15 13 11 23 23 H 1.08994 * 109.47516 * 259.73204 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7019 1.3464 -0.0006 5 1 1.8831 2.3964 -1.2125 6 1 1.8831 2.3965 1.2124 7 6 2.0079 -1.2123 0.0005 8 1 3.0879 -1.2123 0.0010 9 6 1.3023 -2.4345 0.0005 10 7 -0.0023 -2.4476 0.2962 11 6 -0.6936 -3.5653 0.3062 12 9 -2.0094 -3.5329 0.6110 13 6 -0.0829 -4.7890 0.0110 14 8 -0.8059 -5.9372 0.0299 15 6 1.2743 -4.8174 -0.3073 16 6 1.9766 -3.6298 -0.3105 17 6 3.4462 -3.6129 -0.6432 18 9 3.7814 -4.7821 -1.3346 19 9 3.7305 -2.5007 -1.4429 20 1 -0.4849 0.8401 -0.0004 21 1 -1.2107 -6.1612 -0.8192 22 1 1.7662 -5.7497 -0.5425 23 1 4.0267 -3.5563 0.2776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238666928.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:59 Heat of formation + Delta-G solvation = -158.609266 kcal Electronic energy + Delta-G solvation = -16309.378539 eV Core-core repulsion = 12901.116884 eV Total energy + Delta-G solvation = -3408.261655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.18659 -47.83131 -46.19447 -38.65763 -36.29183 -33.68741 -31.54753 -29.65267 -26.36511 -24.68023 -22.16066 -21.05010 -18.17915 -17.59572 -17.08156 -16.61419 -16.15643 -15.75554 -15.18469 -15.01250 -14.59024 -13.60185 -13.21812 -13.02122 -12.81643 -12.73393 -12.42699 -12.24925 -11.78406 -11.30652 -11.24778 -10.76249 -10.51803 -10.40853 -10.13238 -9.56055 -8.63110 -8.10500 -7.71687 -6.84910 -4.92599 2.14129 2.42185 2.94390 2.95432 3.00831 3.72338 4.26368 4.60508 4.82241 5.10280 5.25693 5.32149 5.69464 5.83583 5.84334 6.23987 6.74125 6.84756 7.00367 7.01778 7.45966 7.79778 8.13607 8.35668 8.59021 9.41645 9.91163 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.012783 C = 0.008228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.533199 B = 2189.958962 C = 3402.064772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.063 3.937 3 Si 0.918 3.082 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.105 0.895 9 C 0.290 3.710 10 N -0.500 5.500 11 C 0.332 3.668 12 F -0.132 7.132 13 C -0.139 4.139 14 O -0.486 6.486 15 C -0.009 4.009 16 C -0.337 4.337 17 C 0.340 3.660 18 F -0.218 7.218 19 F -0.197 7.197 20 H 0.283 0.717 21 H 0.355 0.645 22 H 0.122 0.878 23 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 -1.931 -1.045 4.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.166 4.166 3 Si 0.741 3.259 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.425 4.425 8 H 0.123 0.877 9 C 0.168 3.832 10 N -0.219 5.219 11 C 0.166 3.834 12 F -0.112 7.112 13 C -0.190 4.190 14 O -0.291 6.291 15 C -0.033 4.033 16 C -0.343 4.343 17 C 0.285 3.715 18 F -0.200 7.200 19 F -0.178 7.178 20 H 0.094 0.906 21 H 0.207 0.793 22 H 0.140 0.860 23 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.368 -0.999 -0.281 3.524 hybrid contribution 0.173 -0.105 -0.813 0.838 sum 3.540 -1.103 -1.094 3.866 Atomic orbital electron populations 1.70069 1.07630 1.29216 1.25174 1.26246 0.95039 1.01996 0.93273 0.86070 0.80967 0.79920 0.78937 1.17757 1.19392 1.19415 1.20097 0.95496 0.88950 1.37975 0.87678 1.17786 0.85987 0.91315 0.88151 1.68160 1.08548 1.24060 1.21115 1.19150 0.79064 0.90321 0.94884 1.91480 1.32246 1.97168 1.90257 1.18492 0.91239 0.85076 1.24189 1.84911 1.68555 1.39621 1.35980 1.20825 0.92494 0.97000 0.92958 1.20787 0.95665 0.95668 1.22172 1.19796 0.94008 0.70148 0.87501 1.92886 1.93807 1.50510 1.82799 1.92953 1.94646 1.53368 1.76858 0.90602 0.79346 0.85991 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.77 11.58 55.55 0.64 -17.12 14 2 C 0.06 1.49 5.48 -17.34 -0.10 1.39 14 3 Si 0.92 17.34 29.56 -169.99 -5.02 12.32 14 4 H -0.25 -4.67 7.11 56.52 0.40 -4.27 14 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 14 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 14 7 C -0.40 -9.72 7.91 -37.83 -0.30 -10.02 14 8 H 0.11 2.38 5.84 -52.48 -0.31 2.07 14 9 C 0.29 7.44 6.47 -84.99 -0.55 6.89 14 10 N -0.50 -13.55 8.02 -11.30 -0.09 -13.64 14 11 C 0.33 8.41 8.44 -17.10 -0.14 8.27 14 12 F -0.13 -3.24 17.14 2.25 0.04 -3.20 14 13 C -0.14 -3.20 6.78 -38.51 -0.26 -3.46 14 14 O -0.49 -9.85 13.38 -18.82 -0.25 -10.10 14 15 C -0.01 -0.19 9.45 -39.23 -0.37 -0.56 14 16 C -0.34 -7.67 5.78 -103.78 -0.60 -8.27 14 17 C 0.34 6.59 5.13 36.00 0.18 6.78 14 18 F -0.22 -4.10 16.28 2.25 0.04 -4.06 14 19 F -0.20 -4.10 14.57 2.25 0.03 -4.07 14 20 H 0.28 6.41 8.29 -40.82 -0.34 6.07 14 21 H 0.36 5.52 9.06 45.56 0.41 5.93 14 22 H 0.12 2.35 7.44 -52.49 -0.39 1.96 14 23 H 0.10 1.64 8.14 -51.93 -0.42 1.22 14 LS Contribution 226.06 15.07 3.41 3.41 Total: -1.00 -28.52 226.06 -3.19 -31.71 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.16 Total: 3.74 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.14 Total: 1.02 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.55 Total: -30.76 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.25 Total: -10.10 kcal Atomic # 9 Polarization: -11.44 SS G_CDS: 0.11 Total: -11.33 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.02 Total: 12.32 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.52 -3.19 -31.71 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238666928.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.904 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds