Wall clock time and date at job start Mon Mar 30 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48496 * 109.47148 * 274.98510 * 3 2 1 5 5 H 1.48500 * 109.47215 * 34.98699 * 3 2 1 6 6 H 1.48502 * 109.46712 * 154.98392 * 3 2 1 7 7 C 1.40037 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99792 * 186.27834 * 7 2 1 9 9 C 1.41153 * 119.99605 * 6.27651 * 7 2 1 10 10 N 1.33767 * 119.82656 * 353.63653 * 9 7 2 11 11 C 1.31752 * 121.46480 * 179.72195 * 10 9 7 12 12 O 1.35644 * 119.52094 * 179.97438 * 11 10 9 13 13 C 1.39617 * 120.95635 * 359.97227 * 11 10 9 14 14 C 1.38556 * 119.55423 * 0.02649 * 13 11 10 15 15 C 1.50702 * 120.68281 * 180.02562 * 14 13 11 16 16 F 1.39902 * 109.47122 * 29.99324 * 15 14 13 17 17 F 1.39897 * 109.46997 * 149.99700 * 15 14 13 18 18 C 1.38671 * 118.63475 * 0.02562 * 14 13 11 19 19 F 1.35103 * 120.48191 * 180.02562 * 18 14 13 20 20 H 0.97006 * 120.00357 * 359.97438 * 1 2 3 21 21 H 0.96700 * 113.99959 * 90.00113 * 12 11 10 22 22 H 1.07998 * 120.22547 * 180.02562 * 13 11 10 23 23 H 1.09006 * 109.46963 * 270.00014 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1073 -1.3947 5 1 1.4956 2.6200 0.8028 6 1 3.5877 1.4121 0.5921 7 6 2.0078 -1.2127 -0.0005 8 1 3.0829 -1.2155 0.1017 9 6 1.3083 -2.4314 -0.1347 10 7 -0.0294 -2.4345 -0.1329 11 6 -0.7147 -3.5524 -0.2614 12 8 -2.0704 -3.5098 -0.2538 13 6 -0.0657 -4.7801 -0.4054 14 6 1.3191 -4.8244 -0.4128 15 6 2.0458 -6.1356 -0.5673 16 9 1.2688 -7.0121 -1.3323 17 9 3.2703 -5.9175 -1.2078 18 6 2.0227 -3.6374 -0.2752 19 9 3.3737 -3.6372 -0.2779 20 1 -0.4851 0.8401 0.0004 21 1 -2.4653 -3.3955 -1.1290 22 1 -0.6392 -5.6892 -0.5103 23 1 2.2226 -6.5710 0.4163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238669042.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:52 Heat of formation + Delta-G solvation = -158.824750 kcal Electronic energy + Delta-G solvation = -16220.190623 eV Core-core repulsion = 12811.919624 eV Total energy + Delta-G solvation = -3408.270999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.55559 -47.50101 -46.47108 -38.73744 -35.99411 -33.93969 -31.66308 -29.21110 -26.20725 -25.58317 -21.68799 -21.36732 -18.24877 -17.36890 -17.02275 -16.85768 -16.40642 -15.59907 -15.24705 -15.04131 -14.33842 -13.95887 -13.39641 -13.22692 -12.86258 -12.81542 -12.29597 -11.97967 -11.69178 -11.47173 -11.17686 -10.94840 -10.75782 -10.51322 -10.24400 -9.60509 -8.58923 -8.02225 -7.65468 -6.73426 -4.84590 2.18690 2.29594 2.96183 2.98608 3.01533 3.75409 4.17684 4.31439 4.62832 4.89479 5.14802 5.24340 5.48174 5.58079 6.14424 6.35719 6.75209 6.85149 6.89960 7.02468 7.38585 7.88961 8.15935 8.38199 8.64689 9.60196 9.97211 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.030612 B = 0.009785 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.445936 B = 2860.882923 C = 3718.884584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.063 3.937 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.403 4.403 8 H 0.098 0.902 9 C 0.248 3.752 10 N -0.477 5.477 11 C 0.328 3.672 12 O -0.492 6.492 13 C -0.290 4.290 14 C -0.122 4.122 15 C 0.319 3.681 16 F -0.204 7.204 17 F -0.198 7.198 18 C -0.048 4.048 19 F -0.144 7.144 20 H 0.280 0.720 21 H 0.386 0.614 22 H 0.117 0.883 23 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -3.794 -0.880 4.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.165 4.165 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.433 4.433 8 H 0.116 0.884 9 C 0.122 3.878 10 N -0.200 5.200 11 C 0.141 3.859 12 O -0.298 6.298 13 C -0.314 4.314 14 C -0.130 4.130 15 C 0.265 3.735 16 F -0.185 7.185 17 F -0.179 7.179 18 C -0.072 4.072 19 F -0.123 7.123 20 H 0.091 0.909 21 H 0.241 0.759 22 H 0.135 0.865 23 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.383 -2.966 -0.204 2.997 hybrid contribution 0.775 -0.150 -0.706 1.059 sum 1.158 -3.115 -0.910 3.446 Atomic orbital electron populations 1.70131 1.07410 1.28808 1.25298 1.26173 0.95063 1.01654 0.93628 0.86122 0.80581 0.79769 0.79453 1.19069 1.19725 1.18052 1.19766 0.95524 0.89118 1.38861 0.88426 1.18303 0.86981 0.90792 0.91686 1.68309 1.06555 1.26500 1.18587 1.19324 0.83663 0.88558 0.94384 1.84670 1.15988 1.95075 1.34056 1.20807 0.91992 0.98634 1.20013 1.20105 0.94866 0.92318 1.05680 1.20168 0.75407 0.87462 0.90423 1.92944 1.75694 1.70862 1.79045 1.92997 1.44916 1.95464 1.84541 1.18401 0.77038 0.94430 1.17378 1.91333 1.28829 1.97230 1.94930 0.90855 0.75903 0.86460 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.62 11.48 55.55 0.64 -16.98 14 2 C 0.06 1.52 5.49 -17.34 -0.10 1.42 14 3 Si 0.92 17.66 29.56 -169.99 -5.03 12.63 14 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 14 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 14 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.40 -10.42 8.97 -37.80 -0.34 -10.76 14 8 H 0.10 2.40 7.44 -52.49 -0.39 2.01 14 9 C 0.25 6.61 6.55 -84.92 -0.56 6.06 14 10 N -0.48 -12.77 7.91 -11.13 -0.09 -12.85 14 11 C 0.33 7.81 7.74 -17.07 -0.13 7.68 14 12 O -0.49 -10.23 13.56 -18.63 -0.25 -10.49 14 13 C -0.29 -6.37 9.43 -38.95 -0.37 -6.74 14 14 C -0.12 -2.71 5.76 -104.34 -0.60 -3.31 14 15 C 0.32 5.87 5.63 36.01 0.20 6.07 14 16 F -0.20 -3.69 16.56 2.25 0.04 -3.66 14 17 F -0.20 -3.92 15.61 2.25 0.04 -3.88 14 18 C -0.05 -1.19 7.17 -38.43 -0.28 -1.46 14 19 F -0.14 -3.46 14.87 2.25 0.03 -3.43 14 20 H 0.28 6.34 8.29 -40.82 -0.34 6.00 14 21 H 0.39 6.00 9.06 45.56 0.41 6.41 14 22 H 0.12 2.31 7.67 -52.49 -0.40 1.90 14 23 H 0.11 1.69 8.14 -51.93 -0.42 1.26 14 LS Contribution 228.22 15.07 3.44 3.44 Total: -1.00 -29.19 228.22 -3.28 -32.47 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 0.06 Total: 3.78 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.16 Total: -1.03 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.55 Total: -29.83 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.25 Total: -10.49 kcal Atomic # 9 Polarization: -11.07 SS G_CDS: 0.11 Total: -10.97 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.19 -3.28 -32.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238669042.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.352 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds