Wall clock time and date at job start Mon Mar 30 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48496 * 109.47148 * 274.98510 * 3 2 1 5 5 H 1.48500 * 109.47215 * 34.98699 * 3 2 1 6 6 H 1.48502 * 109.46712 * 154.98392 * 3 2 1 7 7 C 1.40037 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99792 * 186.27834 * 7 2 1 9 9 C 1.41153 * 119.99605 * 6.27651 * 7 2 1 10 10 N 1.33767 * 119.82656 * 353.63653 * 9 7 2 11 11 C 1.31752 * 121.46480 * 179.72195 * 10 9 7 12 12 O 1.35644 * 119.52094 * 179.97438 * 11 10 9 13 13 C 1.39617 * 120.95635 * 359.97227 * 11 10 9 14 14 C 1.38556 * 119.55423 * 0.02649 * 13 11 10 15 15 C 1.50702 * 120.68281 * 180.02562 * 14 13 11 16 16 F 1.39902 * 109.47122 * 29.99324 * 15 14 13 17 17 F 1.39897 * 109.46997 * 149.99700 * 15 14 13 18 18 C 1.38671 * 118.63475 * 0.02562 * 14 13 11 19 19 F 1.35103 * 120.48191 * 180.02562 * 18 14 13 20 20 H 0.97006 * 120.00357 * 359.97438 * 1 2 3 21 21 H 0.96700 * 113.99959 * 90.00113 * 12 11 10 22 22 H 1.07998 * 120.22547 * 180.02562 * 13 11 10 23 23 H 1.09006 * 109.46963 * 270.00014 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1073 -1.3947 5 1 1.4956 2.6200 0.8028 6 1 3.5877 1.4121 0.5921 7 6 2.0078 -1.2127 -0.0005 8 1 3.0829 -1.2155 0.1017 9 6 1.3083 -2.4314 -0.1347 10 7 -0.0294 -2.4345 -0.1329 11 6 -0.7147 -3.5524 -0.2614 12 8 -2.0704 -3.5098 -0.2538 13 6 -0.0657 -4.7801 -0.4054 14 6 1.3191 -4.8244 -0.4128 15 6 2.0458 -6.1356 -0.5673 16 9 1.2688 -7.0121 -1.3323 17 9 3.2703 -5.9175 -1.2078 18 6 2.0227 -3.6374 -0.2752 19 9 3.3737 -3.6372 -0.2779 20 1 -0.4851 0.8401 0.0004 21 1 -2.4653 -3.3955 -1.1290 22 1 -0.6392 -5.6892 -0.5103 23 1 2.2226 -6.5710 0.4163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238669042.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:52 Heat of formation + Delta-G solvation = -180.131447 kcal Electronic energy + Delta-G solvation = -16221.114551 eV Core-core repulsion = 12811.919624 eV Total energy + Delta-G solvation = -3409.194927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.06123 -49.31083 -47.96279 -40.55280 -37.72735 -35.73603 -33.46270 -31.06264 -27.95760 -27.29314 -23.51606 -23.10401 -19.96354 -19.17766 -18.47431 -18.45838 -18.20150 -17.25818 -16.96524 -16.77910 -16.16953 -15.65908 -14.99600 -14.79359 -14.57806 -14.34076 -13.89743 -13.73440 -13.42343 -13.19864 -12.84114 -12.66134 -12.31277 -12.21468 -11.89113 -11.33479 -10.40841 -9.87240 -9.51934 -8.53025 -6.75991 0.36321 0.50321 1.38844 1.46712 1.54733 2.15797 2.48711 2.73431 3.07317 3.24698 3.42993 3.52128 3.88913 3.98843 4.38938 4.55978 4.97675 5.03125 5.12274 5.26302 5.61596 5.99714 6.35324 6.56072 6.97065 7.73477 8.21526 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.030612 B = 0.009785 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.445936 B = 2860.882923 C = 3718.884584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.023 3.977 3 Si 0.995 3.005 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.254 1.254 7 C -0.437 4.437 8 H 0.097 0.903 9 C 0.220 3.780 10 N -0.511 5.511 11 C 0.317 3.683 12 O -0.494 6.494 13 C -0.279 4.279 14 C -0.119 4.119 15 C 0.323 3.677 16 F -0.200 7.200 17 F -0.207 7.207 18 C -0.077 4.077 19 F -0.146 7.146 20 H 0.289 0.711 21 H 0.408 0.592 22 H 0.146 0.854 23 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -4.220 -0.885 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.202 4.202 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.177 1.177 7 C -0.467 4.467 8 H 0.115 0.885 9 C 0.095 3.905 10 N -0.234 5.234 11 C 0.130 3.870 12 O -0.303 6.303 13 C -0.303 4.303 14 C -0.127 4.127 15 C 0.270 3.730 16 F -0.181 7.181 17 F -0.188 7.188 18 C -0.102 4.102 19 F -0.125 7.125 20 H 0.100 0.900 21 H 0.267 0.733 22 H 0.164 0.836 23 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.449 -3.421 -0.227 3.457 hybrid contribution 0.630 -0.132 -0.731 0.973 sum 1.078 -3.553 -0.957 3.834 Atomic orbital electron populations 1.70186 1.08990 1.30289 1.25989 1.27089 0.95836 1.04786 0.92445 0.84997 0.79089 0.74866 0.79708 1.18433 1.18543 1.17711 1.20076 0.95801 0.90241 1.40578 0.88466 1.18682 0.87519 0.92038 0.92266 1.68263 1.06941 1.28239 1.19950 1.19655 0.84629 0.88770 0.93902 1.84613 1.14578 1.95010 1.36084 1.21091 0.92168 0.98941 1.18122 1.20531 0.95158 0.93447 1.03551 1.20415 0.74489 0.85827 0.92281 1.92954 1.75603 1.70310 1.79234 1.92984 1.45380 1.95495 1.84929 1.18494 0.77209 0.95043 1.19409 1.91310 1.28791 1.97269 1.95157 0.90034 0.73305 0.83633 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.64 11.48 21.84 0.25 -37.39 14 2 C 0.02 1.11 5.49 85.29 0.47 1.58 14 3 Si 0.99 36.11 29.56 68.60 2.03 38.14 14 4 H -0.26 -9.11 7.11 99.48 0.71 -8.40 14 5 H -0.26 -8.92 7.11 99.48 0.71 -8.21 14 6 H -0.25 -8.96 7.11 99.48 0.71 -8.25 14 7 C -0.44 -23.14 8.97 23.42 0.21 -22.93 14 8 H 0.10 4.93 7.44 -2.91 -0.02 4.91 14 9 C 0.22 11.99 6.55 40.21 0.26 12.25 14 10 N -0.51 -27.66 7.91 -302.28 -2.39 -30.06 14 11 C 0.32 14.92 7.74 85.04 0.66 15.57 14 12 O -0.49 -19.93 13.56 -89.58 -1.21 -21.14 14 13 C -0.28 -11.74 9.43 22.68 0.21 -11.52 14 14 C -0.12 -5.10 5.76 -19.68 -0.11 -5.22 14 15 C 0.32 10.96 5.63 71.24 0.40 11.37 14 16 F -0.20 -6.57 16.56 44.97 0.74 -5.83 14 17 F -0.21 -7.77 15.61 44.97 0.70 -7.07 14 18 C -0.08 -3.84 7.17 23.02 0.17 -3.67 14 19 F -0.15 -7.05 14.87 44.97 0.67 -6.39 14 20 H 0.29 13.16 8.29 -92.70 -0.77 12.39 14 21 H 0.41 12.09 9.06 -74.06 -0.67 11.42 14 22 H 0.15 5.23 7.67 -2.91 -0.02 5.21 14 23 H 0.16 4.08 8.14 -2.38 -0.02 4.06 14 Total: -1.00 -62.87 228.22 3.67 -59.20 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.62 Total: 13.11 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 2.27 Total: -2.58 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -2.14 Total: -67.44 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.21 Total: -21.14 kcal Atomic # 9 Polarization: -21.40 SS G_CDS: 2.11 Total: -19.29 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -62.87 3.67 -59.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238669042.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.934 kcal (2) G-P(sol) polarization free energy of solvation -62.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds