Wall clock time and date at job start Mon Mar 30 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86804 * 119.99578 * 2 1 4 4 H 1.48503 * 109.46853 * 239.99882 * 3 2 1 5 5 H 1.48500 * 109.47296 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47072 * 120.00607 * 3 2 1 7 7 C 1.40049 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.40992 * 120.00122 * 359.97438 * 7 2 1 10 10 N 1.33774 * 119.87216 * 0.27156 * 9 7 2 11 11 C 1.31500 * 121.52934 * 180.28395 * 10 9 7 12 12 F 1.35104 * 119.43370 * 179.71134 * 11 10 9 13 13 C 1.39315 * 121.12451 * 359.43912 * 11 10 9 14 14 C 1.50707 * 120.17966 * 180.25265 * 13 11 10 15 15 F 1.39898 * 109.46991 * 29.99736 * 14 13 11 16 16 F 1.39901 * 109.46970 * 149.99843 * 14 13 11 17 17 C 1.38499 * 119.63401 * 0.27501 * 13 11 10 18 18 C 1.39036 * 118.57109 * 359.97438 * 17 13 11 19 19 O 1.35599 * 120.55793 * 179.97438 * 18 17 13 20 20 H 0.97000 * 119.99904 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46923 * 269.99702 * 14 13 11 22 22 H 1.07996 * 120.71063 * 179.97438 * 17 13 11 23 23 H 0.96698 * 114.00346 * 90.00035 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0954 1.6965 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0955 1.6965 1.2124 7 6 2.0080 -1.2128 0.0005 8 1 3.0880 -1.2128 0.0001 9 6 1.3031 -2.4339 0.0016 10 7 -0.0347 -2.4310 -0.0033 11 6 -0.7248 -3.5503 0.0030 12 9 -2.0748 -3.4979 0.0036 13 6 -0.0876 -4.7892 0.0036 14 6 -0.8996 -6.0588 0.0053 15 9 -2.1136 -5.8367 -0.6535 16 9 -0.1890 -7.0676 -0.6539 17 6 1.2962 -4.8476 0.0032 18 6 2.0120 -3.6556 0.0016 19 8 3.3679 -3.6657 0.0016 20 1 -0.4850 0.8401 0.0004 21 1 -1.0946 -6.3640 1.0334 22 1 1.8081 -5.7985 0.0040 23 1 3.7613 -3.6699 -0.8817 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238669562.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:55 Heat of formation + Delta-G solvation = -180.795361 kcal Electronic energy + Delta-G solvation = -16199.800056 eV Core-core repulsion = 12790.576340 eV Total energy + Delta-G solvation = -3409.223716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.01214 -49.52360 -47.82021 -40.51596 -37.53844 -35.87567 -33.28330 -30.95191 -28.93992 -25.84759 -24.04125 -22.87675 -19.94979 -19.12459 -18.70094 -18.33391 -18.04019 -17.43563 -16.86776 -16.67332 -16.36550 -15.39538 -14.89996 -14.78789 -14.62771 -14.30437 -13.86663 -13.79015 -13.42051 -13.16575 -12.80525 -12.73837 -12.23767 -12.11264 -11.68972 -11.32883 -10.40972 -9.89007 -9.54018 -8.56358 -6.81186 0.34762 0.69642 1.39014 1.49206 1.54101 2.13810 2.49284 2.98607 3.12550 3.33612 3.48072 3.63860 4.03506 4.16379 4.18583 4.51654 4.96810 5.16147 5.21767 5.26982 5.77428 5.97981 6.30730 6.54515 7.15759 7.61069 8.16292 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.038251 B = 0.008814 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.840014 B = 3176.075693 C = 3861.220962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.408 4.408 8 H 0.113 0.887 9 C 0.223 3.777 10 N -0.541 5.541 11 C 0.335 3.665 12 F -0.133 7.133 13 C -0.390 4.390 14 C 0.341 3.659 15 F -0.216 7.216 16 F -0.210 7.210 17 C -0.025 4.025 18 C -0.075 4.075 19 O -0.486 6.486 20 H 0.289 0.711 21 H 0.144 0.856 22 H 0.150 0.850 23 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -3.558 -0.082 4.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.437 4.437 8 H 0.131 0.869 9 C 0.100 3.900 10 N -0.262 5.262 11 C 0.171 3.829 12 F -0.113 7.113 13 C -0.398 4.398 14 C 0.287 3.713 15 F -0.197 7.197 16 F -0.191 7.191 17 C -0.048 4.048 18 C -0.124 4.124 19 O -0.294 6.294 20 H 0.100 0.900 21 H 0.161 0.839 22 H 0.167 0.833 23 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.026 -2.642 0.489 3.365 hybrid contribution 0.129 -0.169 -0.679 0.712 sum 2.155 -2.811 -0.190 3.547 Atomic orbital electron populations 1.70216 1.09474 1.30638 1.25093 1.27345 0.95781 1.05554 0.92426 0.84974 0.78485 0.73989 0.80696 1.17415 1.19229 1.17822 1.20242 0.96068 0.89533 1.37828 0.86878 1.19051 0.86355 0.93992 0.90608 1.68166 1.08848 1.26047 1.23136 1.18494 0.78095 0.90648 0.95658 1.91495 1.29017 1.97282 1.93459 1.20416 0.95542 0.93058 1.30816 1.20134 0.75218 0.82999 0.92964 1.92947 1.47045 1.95268 1.84460 1.92916 1.79274 1.62466 1.84432 1.21012 0.91496 0.98305 0.93991 1.19235 0.83957 0.92068 1.17166 1.84687 1.15074 1.96178 1.33506 0.89950 0.83896 0.83256 0.76226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.85 11.46 21.84 0.25 -37.60 14 2 C 0.01 0.65 5.50 85.29 0.47 1.12 14 3 Si 1.00 34.58 29.56 68.60 2.03 36.61 14 4 H -0.25 -8.18 7.11 99.48 0.71 -7.48 14 5 H -0.27 -8.91 7.11 99.48 0.71 -8.21 14 6 H -0.25 -8.49 7.11 99.48 0.71 -7.79 14 7 C -0.41 -20.34 8.94 23.38 0.21 -20.13 14 8 H 0.11 5.14 7.31 -2.91 -0.02 5.12 14 9 C 0.22 11.72 6.56 40.26 0.26 11.98 14 10 N -0.54 -30.08 7.87 -189.77 -1.49 -31.58 14 11 C 0.33 16.94 8.26 85.00 0.70 17.65 14 12 F -0.13 -6.56 15.44 44.97 0.69 -5.87 14 13 C -0.39 -16.92 5.77 -19.54 -0.11 -17.03 14 14 C 0.34 12.04 5.60 71.24 0.40 12.44 14 15 F -0.22 -8.40 15.50 44.97 0.70 -7.70 14 16 F -0.21 -7.16 16.53 44.97 0.74 -6.42 14 17 C -0.02 -1.04 9.45 22.52 0.21 -0.82 14 18 C -0.08 -3.45 6.77 23.20 0.16 -3.30 14 19 O -0.49 -19.17 12.64 -89.09 -1.13 -20.29 14 20 H 0.29 13.39 8.29 -92.71 -0.77 12.62 14 21 H 0.14 3.95 8.14 -2.38 -0.02 3.93 14 22 H 0.15 5.24 7.66 -2.91 -0.02 5.22 14 23 H 0.38 11.39 9.06 -74.06 -0.67 10.72 14 Total: -1.00 -61.51 227.64 4.71 -56.80 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.62 Total: 14.14 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 2.30 Total: 1.91 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.24 Total: -69.18 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.13 Total: -20.29 kcal Atomic # 9 Polarization: -22.13 SS G_CDS: 2.13 Total: -19.99 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Total: -61.51 4.71 -56.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238669562.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.993 kcal (2) G-P(sol) polarization free energy of solvation -61.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds