Wall clock time and date at job start Mon Mar 30 2020 03:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30762 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48493 * 109.47341 * 269.99641 * 3 2 1 5 5 H 1.48498 * 109.47021 * 29.99974 * 3 2 1 6 6 H 1.48503 * 109.46827 * 150.00048 * 3 2 1 7 7 C 1.40030 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.41280 * 119.99434 * 0.02562 * 7 2 1 10 10 N 1.33754 * 119.84105 * 359.97343 * 9 7 2 11 11 C 1.31429 * 121.66987 * 180.02562 * 10 9 7 12 12 C 1.50695 * 119.42154 * 180.02562 * 11 10 9 13 13 F 1.39897 * 109.47405 * 29.99961 * 12 11 10 14 14 F 1.39896 * 109.47090 * 150.00372 * 12 11 10 15 15 C 1.38670 * 121.15192 * 0.02562 * 11 10 9 16 16 C 1.39260 * 119.54513 * 0.02562 * 15 11 10 17 17 O 1.35819 * 120.76998 * 180.02562 * 16 15 11 18 18 C 1.39186 * 118.46090 * 359.97438 * 16 15 11 19 19 F 1.35098 * 120.57622 * 180.27402 * 18 16 15 20 20 H 0.96997 * 119.99608 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.47092 * 270.00177 * 12 11 10 22 22 H 1.08004 * 120.22298 * 179.97438 * 15 11 10 23 23 H 0.96696 * 114.00292 * 269.97697 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0464 -1.4000 5 1 1.4391 2.6526 0.7000 6 1 3.5392 1.4401 0.7001 7 6 2.0078 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3013 -2.4361 0.0005 10 7 -0.0362 -2.4323 0.0006 11 6 -0.7294 -3.5489 0.0011 12 6 -2.2351 -3.4855 0.0005 13 9 -2.6527 -2.3251 -0.6599 14 9 -2.7488 -4.6076 -0.6584 15 6 -0.0996 -4.7843 0.0021 16 6 1.2917 -4.8458 0.0032 17 8 1.9343 -6.0423 0.0037 18 6 2.0083 -3.6527 0.0027 19 9 3.3593 -3.6624 -0.0019 20 1 -0.4849 0.8401 0.0004 21 1 -2.5985 -3.4695 1.0281 22 1 -0.6840 -5.6926 0.0029 23 1 2.1201 -6.3887 0.8872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238675898.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:05 Heat of formation + Delta-G solvation = -161.483565 kcal Electronic energy + Delta-G solvation = -16203.509969 eV Core-core repulsion = 12795.123675 eV Total energy + Delta-G solvation = -3408.386294 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.24330 -47.47076 -46.22710 -38.70250 -36.56818 -33.87837 -30.71060 -29.62856 -26.77709 -25.06962 -22.01471 -21.01752 -18.50127 -17.17670 -16.76971 -16.45941 -16.15316 -16.06275 -15.35947 -14.93433 -14.44840 -13.67294 -13.29986 -13.03734 -12.74640 -12.50894 -12.34543 -12.25889 -11.83022 -11.51257 -11.31418 -11.01479 -10.65993 -10.55689 -9.67241 -9.60030 -8.27627 -8.12424 -7.86141 -6.74303 -4.84120 2.13833 2.36655 2.96847 2.98655 3.02158 3.76251 4.27801 4.36748 4.73653 4.90007 5.25249 5.45260 5.59442 5.71234 6.14270 6.38396 6.75025 6.83489 6.90686 7.08997 7.31138 7.89795 8.09265 8.38799 8.49922 9.51670 9.98144 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.021668 B = 0.012139 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.943650 B = 2306.108588 C = 3558.170328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.062 3.938 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.401 4.401 8 H 0.096 0.904 9 C 0.238 3.762 10 N -0.443 5.443 11 C 0.088 3.912 12 C 0.331 3.669 13 F -0.187 7.187 14 F -0.208 7.208 15 C -0.300 4.300 16 C 0.135 3.865 17 O -0.497 6.497 18 C -0.087 4.087 19 F -0.149 7.149 20 H 0.281 0.719 21 H 0.113 0.887 22 H 0.118 0.882 23 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 -2.320 2.950 4.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.166 4.166 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.431 4.431 8 H 0.114 0.886 9 C 0.113 3.887 10 N -0.156 5.156 11 C -0.060 4.060 12 C 0.277 3.723 13 F -0.168 7.168 14 F -0.190 7.190 15 C -0.325 4.325 16 C 0.084 3.916 17 O -0.305 6.305 18 C -0.112 4.112 19 F -0.128 7.128 20 H 0.093 0.907 21 H 0.130 0.870 22 H 0.136 0.864 23 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.339 -1.274 2.302 3.520 hybrid contribution 0.978 -0.321 0.374 1.095 sum -1.361 -1.595 2.676 3.400 Atomic orbital electron populations 1.70103 1.07265 1.28953 1.25014 1.26161 0.95109 1.01573 0.93747 0.86137 0.80406 0.79742 0.79650 1.19008 1.19721 1.18206 1.19745 0.95064 0.88943 1.39304 0.88618 1.18482 0.87584 0.90796 0.91826 1.68469 1.06027 1.24847 1.16262 1.21321 0.94610 0.90623 0.99496 1.19967 0.89364 0.70851 0.92162 1.93008 1.91067 1.49241 1.83480 1.92934 1.88222 1.53497 1.84299 1.21016 0.92796 0.97858 1.20795 1.18325 0.90107 0.83070 1.00091 1.84740 1.78659 1.34396 1.32742 1.19218 0.77111 0.94611 1.20244 1.91281 1.29129 1.97288 1.95103 0.90713 0.86950 0.86377 0.76474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.43 11.46 55.55 0.64 -16.79 14 2 C 0.06 1.50 5.50 -17.34 -0.10 1.41 14 3 Si 0.92 17.69 29.56 -169.99 -5.02 12.66 14 4 H -0.27 -5.09 7.11 56.52 0.40 -4.68 14 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 6 H -0.26 -4.92 7.11 56.52 0.40 -4.51 14 7 C -0.40 -10.40 8.99 -37.75 -0.34 -10.74 14 8 H 0.10 2.38 7.42 -52.49 -0.39 1.99 14 9 C 0.24 6.36 6.56 -84.94 -0.56 5.80 14 10 N -0.44 -11.63 7.44 -7.38 -0.05 -11.69 14 11 C 0.09 2.04 6.58 -82.61 -0.54 1.50 14 12 C 0.33 6.46 5.72 36.00 0.21 6.66 14 13 F -0.19 -4.08 17.05 2.25 0.04 -4.04 14 14 F -0.21 -3.90 16.44 2.25 0.04 -3.87 14 15 C -0.30 -6.61 9.40 -39.04 -0.37 -6.98 14 16 C 0.13 3.09 6.77 -38.85 -0.26 2.82 14 17 O -0.50 -9.81 13.44 -19.17 -0.26 -10.06 14 18 C -0.09 -2.20 7.35 -38.30 -0.28 -2.48 14 19 F -0.15 -3.68 16.46 2.25 0.04 -3.64 14 20 H 0.28 6.36 8.29 -40.82 -0.34 6.02 14 21 H 0.11 1.76 8.14 -51.92 -0.42 1.34 14 22 H 0.12 2.33 7.58 -52.48 -0.40 1.93 14 23 H 0.38 5.38 9.06 45.56 0.41 5.79 14 LS Contribution 230.55 15.07 3.47 3.47 Total: -1.00 -29.47 230.55 -3.29 -32.75 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 0.07 Total: 3.20 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.24 Total: -2.00 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 0.58 Total: -28.48 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.26 Total: -10.06 kcal Atomic # 9 Polarization: -11.66 SS G_CDS: 0.11 Total: -11.54 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.02 Total: 12.66 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.47 -3.29 -32.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238675898.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.731 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds