Wall clock time and date at job start Mon Mar 30 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30762 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48493 * 109.47341 * 269.99641 * 3 2 1 5 5 H 1.48498 * 109.47021 * 29.99974 * 3 2 1 6 6 H 1.48503 * 109.46827 * 150.00048 * 3 2 1 7 7 C 1.40030 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.41280 * 119.99434 * 0.02562 * 7 2 1 10 10 N 1.33754 * 119.84105 * 359.97343 * 9 7 2 11 11 C 1.31429 * 121.66987 * 180.02562 * 10 9 7 12 12 C 1.50695 * 119.42154 * 180.02562 * 11 10 9 13 13 F 1.39897 * 109.47405 * 29.99961 * 12 11 10 14 14 F 1.39896 * 109.47090 * 150.00372 * 12 11 10 15 15 C 1.38670 * 121.15192 * 0.02562 * 11 10 9 16 16 C 1.39260 * 119.54513 * 0.02562 * 15 11 10 17 17 O 1.35819 * 120.76998 * 180.02562 * 16 15 11 18 18 C 1.39186 * 118.46090 * 359.97438 * 16 15 11 19 19 F 1.35098 * 120.57622 * 180.27402 * 18 16 15 20 20 H 0.96997 * 119.99608 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.47092 * 270.00177 * 12 11 10 22 22 H 1.08004 * 120.22298 * 179.97438 * 15 11 10 23 23 H 0.96696 * 114.00292 * 269.97697 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0464 -1.4000 5 1 1.4391 2.6526 0.7000 6 1 3.5392 1.4401 0.7001 7 6 2.0078 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3013 -2.4361 0.0005 10 7 -0.0362 -2.4323 0.0006 11 6 -0.7294 -3.5489 0.0011 12 6 -2.2351 -3.4855 0.0005 13 9 -2.6527 -2.3251 -0.6599 14 9 -2.7488 -4.6076 -0.6584 15 6 -0.0996 -4.7843 0.0021 16 6 1.2917 -4.8458 0.0032 17 8 1.9343 -6.0423 0.0037 18 6 2.0083 -3.6527 0.0027 19 9 3.3593 -3.6624 -0.0019 20 1 -0.4849 0.8401 0.0004 21 1 -2.5985 -3.4695 1.0281 22 1 -0.6840 -5.6926 0.0029 23 1 2.1201 -6.3887 0.8872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238675898.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:04 Heat of formation + Delta-G solvation = -181.963679 kcal Electronic energy + Delta-G solvation = -16204.398053 eV Core-core repulsion = 12795.123675 eV Total energy + Delta-G solvation = -3409.274378 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.80813 -49.36557 -47.81481 -40.49837 -38.26381 -35.68753 -32.52322 -31.42605 -28.58091 -26.79760 -23.82833 -22.77733 -20.24011 -18.92186 -18.31371 -18.22418 -17.90503 -17.80533 -17.05011 -16.64228 -16.27890 -15.38508 -14.97172 -14.63725 -14.46077 -14.17707 -14.08104 -14.02871 -13.55519 -13.21623 -12.93100 -12.80576 -12.31528 -12.06596 -11.39198 -11.32303 -10.09365 -9.96392 -9.73524 -8.53438 -6.76000 0.30373 0.58254 1.39440 1.47023 1.54691 2.16476 2.51214 2.76174 3.13726 3.30150 3.42317 3.67960 3.98309 4.14761 4.38024 4.59737 4.92005 5.04917 5.10686 5.31764 5.58720 5.99475 6.33582 6.60117 6.81089 7.66098 8.22382 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.021668 B = 0.012139 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.943650 B = 2306.108588 C = 3558.170328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.024 3.976 3 Si 0.994 3.006 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.256 1.256 7 C -0.435 4.435 8 H 0.093 0.907 9 C 0.211 3.789 10 N -0.470 5.470 11 C 0.074 3.926 12 C 0.335 3.665 13 F -0.202 7.202 14 F -0.202 7.202 15 C -0.293 4.293 16 C 0.147 3.853 17 O -0.497 6.497 18 C -0.125 4.125 19 F -0.154 7.154 20 H 0.290 0.710 21 H 0.159 0.841 22 H 0.147 0.853 23 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 -2.485 3.358 4.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.201 4.201 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.180 1.180 7 C -0.464 4.464 8 H 0.111 0.889 9 C 0.086 3.914 10 N -0.184 5.184 11 C -0.074 4.074 12 C 0.280 3.720 13 F -0.183 7.183 14 F -0.183 7.183 15 C -0.318 4.318 16 C 0.095 3.905 17 O -0.309 6.309 18 C -0.149 4.149 19 F -0.133 7.133 20 H 0.101 0.899 21 H 0.176 0.824 22 H 0.164 0.836 23 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.779 -1.480 2.728 4.166 hybrid contribution 1.083 -0.452 0.246 1.199 sum -1.696 -1.932 2.975 3.932 Atomic orbital electron populations 1.70152 1.08715 1.30410 1.25381 1.27031 0.95906 1.04548 0.92656 0.85023 0.78979 0.75014 0.79723 1.18675 1.18276 1.17957 1.20032 0.95238 0.90116 1.41013 0.88914 1.18863 0.88376 0.91786 0.92328 1.68466 1.06015 1.26473 1.17416 1.22010 0.96618 0.90448 0.98332 1.20252 0.87260 0.70374 0.94069 1.92977 1.90989 1.50336 1.84048 1.92945 1.87842 1.53048 1.84492 1.21309 0.92624 0.98591 1.19237 1.18395 0.90473 0.83355 0.98252 1.84663 1.78320 1.32795 1.35151 1.19421 0.77220 0.95423 1.22842 1.91247 1.29313 1.97344 1.95404 0.89889 0.82376 0.83566 0.73266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.74 11.46 21.84 0.25 -36.49 14 2 C 0.02 1.14 5.50 85.29 0.47 1.61 14 3 Si 0.99 36.11 29.56 68.60 2.03 38.14 14 4 H -0.26 -9.32 7.11 99.48 0.71 -8.62 14 5 H -0.26 -8.75 7.11 99.48 0.71 -8.04 14 6 H -0.26 -9.09 7.11 99.48 0.71 -8.38 14 7 C -0.43 -23.09 8.99 23.45 0.21 -22.88 14 8 H 0.09 4.76 7.42 -2.91 -0.02 4.74 14 9 C 0.21 11.50 6.56 40.20 0.26 11.77 14 10 N -0.47 -24.81 7.44 -177.25 -1.32 -26.13 14 11 C 0.07 3.36 6.58 42.72 0.28 3.65 14 12 C 0.33 12.31 5.72 71.23 0.41 12.72 14 13 F -0.20 -8.60 17.05 44.97 0.77 -7.84 14 14 F -0.20 -7.02 16.44 44.97 0.74 -6.28 14 15 C -0.29 -12.36 9.40 22.62 0.21 -12.15 14 16 C 0.15 6.54 6.77 22.74 0.15 6.70 14 17 O -0.50 -18.51 13.44 -91.52 -1.23 -19.74 14 18 C -0.12 -6.35 7.35 23.10 0.17 -6.18 14 19 F -0.15 -7.72 16.46 44.97 0.74 -6.98 14 20 H 0.29 13.09 8.29 -92.71 -0.77 12.32 14 21 H 0.16 4.43 8.14 -2.38 -0.02 4.41 14 22 H 0.15 5.27 7.58 -2.91 -0.02 5.25 14 23 H 0.41 10.41 9.06 -74.06 -0.67 9.74 14 Total: -1.00 -63.42 230.55 4.76 -58.66 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.62 Total: 11.42 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 2.17 Total: -4.76 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -1.07 Total: -62.62 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.23 Total: -19.74 kcal Atomic # 9 Polarization: -23.34 SS G_CDS: 2.25 Total: -21.10 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -63.42 4.76 -58.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238675898.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.305 kcal (2) G-P(sol) polarization free energy of solvation -63.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds