Wall clock time and date at job start Mon Mar 30 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86799 * 120.00273 * 2 1 4 4 H 1.48494 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46939 * 299.99415 * 3 2 1 6 6 H 1.48497 * 109.47316 * 59.99504 * 3 2 1 7 7 C 1.39930 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00208 * 157.97577 * 7 2 1 9 9 C 1.41117 * 119.99940 * 337.98516 * 7 2 1 10 10 C 1.41684 * 120.73009 * 144.33881 * 9 7 2 11 11 O 1.35545 * 120.95557 * 0.03561 * 10 9 7 12 12 C 1.38847 * 118.08830 * 180.02562 * 10 9 7 13 13 C 1.38181 * 119.41845 * 359.97438 * 12 10 9 14 14 C 1.50705 * 119.26946 * 180.27849 * 13 12 10 15 15 F 1.39899 * 109.46900 * 209.72454 * 14 13 12 16 16 F 1.39897 * 109.47060 * 329.72831 * 14 13 12 17 17 N 1.32212 * 121.45891 * 0.02562 * 13 12 10 18 18 C 1.31723 * 122.11531 * 359.97438 * 17 13 12 19 19 F 1.35101 * 119.81155 * 179.97438 * 18 17 13 20 20 H 0.96996 * 119.99530 * 0.02562 * 1 2 3 21 21 H 0.96703 * 113.99483 * 90.00515 * 11 10 9 22 22 H 1.07997 * 120.28795 * 180.02562 * 12 10 9 23 23 H 1.08999 * 109.46935 * 89.72598 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8843 2.3963 -1.2126 6 1 1.8842 2.3965 1.2124 7 6 2.0085 -1.2118 0.0005 8 1 3.0294 -1.2461 -0.3502 9 6 1.3801 -2.3892 0.4592 10 6 1.6529 -3.6395 -0.1489 11 8 2.5229 -3.7364 -1.1838 12 6 1.0036 -4.7626 0.3458 13 6 0.1234 -4.6274 1.4025 14 6 -0.5747 -5.8496 1.9409 15 9 -1.8208 -5.4836 2.4610 16 9 -0.7541 -6.7768 0.9088 17 7 -0.1160 -3.4502 1.9547 18 6 0.4671 -2.3471 1.5325 19 9 0.1877 -1.1684 2.1309 20 1 -0.4849 0.8401 -0.0004 21 1 3.4378 -3.8969 -0.9147 22 1 1.1854 -5.7334 -0.0909 23 1 0.0311 -6.2963 2.7293 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238676714.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:08 Heat of formation + Delta-G solvation = -160.462028 kcal Electronic energy + Delta-G solvation = -16218.168337 eV Core-core repulsion = 12809.826340 eV Total energy + Delta-G solvation = -3408.341997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.34288 -47.27441 -46.35795 -38.82914 -36.16597 -34.21399 -30.74037 -30.06485 -27.26653 -24.25292 -22.08226 -21.25391 -18.00083 -17.85051 -16.90090 -16.78226 -16.16818 -15.40710 -15.38245 -14.89947 -14.38532 -14.06168 -13.44791 -13.19125 -12.83676 -12.64406 -12.37494 -12.09461 -11.78176 -11.57424 -11.43020 -11.08311 -10.81855 -10.55791 -9.83428 -9.34193 -8.66794 -8.31560 -7.74261 -7.19740 -4.80071 2.11472 2.28730 2.90709 2.95565 2.99446 3.70226 4.15314 4.30409 4.69021 4.84554 5.05296 5.31767 5.55903 5.73872 5.99645 6.33410 6.69259 6.81870 6.95428 7.01752 7.59546 7.89036 8.13054 8.33005 8.63791 8.94742 9.78283 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.039591 B = 0.008912 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.053153 B = 3140.967676 C = 3679.228483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.071 3.929 3 Si 0.921 3.079 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.419 4.419 8 H 0.096 0.904 9 C 0.037 3.963 10 C 0.031 3.969 11 O -0.479 6.479 12 C -0.131 4.131 13 C -0.068 4.068 14 C 0.345 3.655 15 F -0.200 7.200 16 F -0.208 7.208 17 N -0.475 5.475 18 C 0.247 3.753 19 F -0.114 7.114 20 H 0.293 0.707 21 H 0.365 0.635 22 H 0.121 0.879 23 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -3.805 1.610 5.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.154 4.154 3 Si 0.743 3.257 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.447 4.447 8 H 0.114 0.886 9 C 0.029 3.971 10 C -0.020 4.020 11 O -0.286 6.286 12 C -0.152 4.152 13 C -0.202 4.202 14 C 0.291 3.709 15 F -0.181 7.181 16 F -0.190 7.190 17 N -0.189 5.189 18 C 0.084 3.916 19 F -0.093 7.093 20 H 0.105 0.895 21 H 0.218 0.782 22 H 0.139 0.861 23 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.557 -3.534 1.919 4.765 hybrid contribution 0.985 0.824 -0.412 1.349 sum 3.542 -2.710 1.506 4.707 Atomic orbital electron populations 1.69784 1.08172 1.31160 1.27988 1.26041 0.94821 1.02129 0.92382 0.86035 0.80846 0.79750 0.79030 1.17943 1.19524 1.19081 1.19448 1.00089 0.90921 1.34196 0.88605 1.18586 0.93042 0.94378 0.91051 1.18358 0.99763 0.91390 0.92510 1.84770 1.19554 1.94200 1.30032 1.21463 0.99002 0.98570 0.96172 1.19794 1.06703 0.91597 1.02088 1.19810 0.81087 0.85079 0.84929 1.92957 1.45647 1.92529 1.86987 1.92934 1.95956 1.67511 1.62586 1.65788 1.23441 0.98024 1.31676 1.17872 1.00069 0.80053 0.93598 1.91463 1.92558 1.42798 1.82479 0.89544 0.78224 0.86070 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.16 11.22 55.55 0.62 -18.53 14 2 C 0.07 1.70 4.46 -17.32 -0.08 1.62 14 3 Si 0.92 17.69 29.61 -169.99 -5.03 12.65 14 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 14 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 14 7 C -0.42 -10.42 8.56 -37.86 -0.32 -10.75 14 8 H 0.10 2.21 7.92 -52.49 -0.42 1.79 14 9 C 0.04 0.94 5.43 -106.45 -0.58 0.36 14 10 C 0.03 0.72 6.80 -38.04 -0.26 0.46 14 11 O -0.48 -9.83 13.05 -18.33 -0.24 -10.07 14 12 C -0.13 -2.83 9.36 -39.38 -0.37 -3.19 14 13 C -0.07 -1.52 6.58 -82.45 -0.54 -2.07 14 14 C 0.35 6.40 5.71 36.01 0.21 6.60 14 15 F -0.20 -4.09 17.04 2.25 0.04 -4.05 14 16 F -0.21 -3.78 16.43 2.25 0.04 -3.74 14 17 N -0.47 -12.10 9.93 -9.19 -0.09 -12.19 14 18 C 0.25 6.57 7.86 -16.56 -0.13 6.44 14 19 F -0.11 -3.07 14.31 2.25 0.03 -3.04 14 20 H 0.29 6.74 8.30 -40.82 -0.34 6.40 14 21 H 0.36 5.49 9.06 45.56 0.41 5.90 14 22 H 0.12 2.27 7.57 -52.49 -0.40 1.88 14 23 H 0.11 1.56 8.14 -51.93 -0.42 1.14 14 LS Contribution 228.66 15.07 3.45 3.45 Total: -1.00 -29.43 228.66 -3.22 -32.65 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 0.04 Total: 3.39 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.07 Total: -0.53 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.53 Total: -30.72 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.24 Total: -10.07 kcal Atomic # 9 Polarization: -10.94 SS G_CDS: 0.11 Total: -10.83 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.43 -3.22 -32.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238676714.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.813 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds