Wall clock time and date at job start Mon Mar 30 2020 03:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86799 * 120.00273 * 2 1 4 4 H 1.48494 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46939 * 299.99415 * 3 2 1 6 6 H 1.48497 * 109.47316 * 59.99504 * 3 2 1 7 7 C 1.39930 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00208 * 157.97577 * 7 2 1 9 9 C 1.41117 * 119.99940 * 337.98516 * 7 2 1 10 10 C 1.41684 * 120.73009 * 144.33881 * 9 7 2 11 11 O 1.35545 * 120.95557 * 0.03561 * 10 9 7 12 12 C 1.38847 * 118.08830 * 180.02562 * 10 9 7 13 13 C 1.38181 * 119.41845 * 359.97438 * 12 10 9 14 14 C 1.50705 * 119.26946 * 180.27849 * 13 12 10 15 15 F 1.39899 * 109.46900 * 209.72454 * 14 13 12 16 16 F 1.39897 * 109.47060 * 329.72831 * 14 13 12 17 17 N 1.32212 * 121.45891 * 0.02562 * 13 12 10 18 18 C 1.31723 * 122.11531 * 359.97438 * 17 13 12 19 19 F 1.35101 * 119.81155 * 179.97438 * 18 17 13 20 20 H 0.96996 * 119.99530 * 0.02562 * 1 2 3 21 21 H 0.96703 * 113.99483 * 90.00515 * 11 10 9 22 22 H 1.07997 * 120.28795 * 180.02562 * 12 10 9 23 23 H 1.08999 * 109.46935 * 89.72598 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8843 2.3963 -1.2126 6 1 1.8842 2.3965 1.2124 7 6 2.0085 -1.2118 0.0005 8 1 3.0294 -1.2461 -0.3502 9 6 1.3801 -2.3892 0.4592 10 6 1.6529 -3.6395 -0.1489 11 8 2.5229 -3.7364 -1.1838 12 6 1.0036 -4.7626 0.3458 13 6 0.1234 -4.6274 1.4025 14 6 -0.5747 -5.8496 1.9409 15 9 -1.8208 -5.4836 2.4610 16 9 -0.7541 -6.7768 0.9088 17 7 -0.1160 -3.4502 1.9547 18 6 0.4671 -2.3471 1.5325 19 9 0.1877 -1.1684 2.1309 20 1 -0.4849 0.8401 -0.0004 21 1 3.4378 -3.8969 -0.9147 22 1 1.1854 -5.7334 -0.0909 23 1 0.0311 -6.2963 2.7293 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238676714.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:07 Heat of formation + Delta-G solvation = -181.613751 kcal Electronic energy + Delta-G solvation = -16219.085544 eV Core-core repulsion = 12809.826340 eV Total energy + Delta-G solvation = -3409.259204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.83394 -49.24930 -47.86277 -40.62383 -37.89199 -35.99448 -32.53362 -31.85656 -28.96632 -25.96579 -23.92695 -22.98270 -19.81107 -19.57034 -18.50064 -18.31095 -17.82351 -17.15067 -17.08123 -16.67852 -16.29642 -15.73118 -15.19263 -14.71032 -14.46821 -14.20834 -14.08470 -13.84124 -13.51622 -13.31272 -13.18261 -12.72413 -12.36588 -12.05679 -11.53127 -11.07719 -10.51065 -10.12447 -9.59019 -8.96153 -6.66252 0.32300 0.45937 1.35074 1.42663 1.53809 2.10946 2.41538 2.68901 3.07191 3.20600 3.37085 3.60460 4.11927 4.18363 4.30666 4.58759 4.89869 5.05133 5.16600 5.30771 5.75550 6.04838 6.36426 6.51399 7.07915 7.09909 8.05488 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.039591 B = 0.008912 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.053153 B = 3140.967676 C = 3679.228483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.030 3.970 3 Si 0.992 3.008 4 H -0.243 1.243 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.448 4.448 8 H 0.107 0.893 9 C 0.009 3.991 10 C 0.039 3.961 11 O -0.484 6.484 12 C -0.131 4.131 13 C -0.069 4.069 14 C 0.348 3.652 15 F -0.213 7.213 16 F -0.204 7.204 17 N -0.495 5.495 18 C 0.205 3.795 19 F -0.128 7.128 20 H 0.298 0.702 21 H 0.394 0.606 22 H 0.156 0.844 23 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 -4.758 1.295 7.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.190 4.190 3 Si 0.811 3.189 4 H -0.166 1.166 5 H -0.186 1.186 6 H -0.192 1.192 7 C -0.475 4.475 8 H 0.125 0.875 9 C 0.002 3.998 10 C -0.013 4.013 11 O -0.294 6.294 12 C -0.152 4.152 13 C -0.205 4.205 14 C 0.294 3.706 15 F -0.194 7.194 16 F -0.185 7.185 17 N -0.210 5.210 18 C 0.045 3.955 19 F -0.107 7.107 20 H 0.109 0.891 21 H 0.250 0.750 22 H 0.173 0.827 23 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.746 -4.486 1.602 6.060 hybrid contribution 0.626 0.914 -0.367 1.167 sum 4.372 -3.572 1.235 5.779 Atomic orbital electron populations 1.69839 1.09947 1.32311 1.29800 1.27008 0.95367 1.05543 0.91102 0.84988 0.79903 0.74986 0.79023 1.16606 1.18616 1.19206 1.19762 1.00726 0.91592 1.35434 0.87538 1.18938 0.93559 0.95944 0.91351 1.18551 0.99735 0.91115 0.91918 1.84672 1.21197 1.94133 1.29373 1.21764 0.98148 0.99540 0.95714 1.20656 1.06130 0.91999 1.01701 1.20182 0.80743 0.83748 0.85970 1.92936 1.46663 1.92710 1.87102 1.92945 1.95913 1.66882 1.62763 1.65827 1.23980 0.98723 1.32450 1.18157 1.02195 0.80139 0.94996 1.91398 1.92875 1.43677 1.82798 0.89065 0.74967 0.82683 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.77 11.22 21.83 0.24 -41.53 14 2 C 0.03 1.44 4.46 85.24 0.38 1.82 14 3 Si 0.99 36.15 29.61 68.60 2.03 38.18 14 4 H -0.24 -8.25 7.11 99.48 0.71 -7.54 14 5 H -0.26 -9.07 7.11 99.48 0.71 -8.37 14 6 H -0.27 -9.68 7.11 99.48 0.71 -8.97 14 7 C -0.45 -22.41 8.56 23.39 0.20 -22.21 14 8 H 0.11 4.86 7.92 -2.91 -0.02 4.84 14 9 C 0.01 0.46 5.43 -21.05 -0.11 0.35 14 10 C 0.04 1.75 6.80 23.27 0.16 1.91 14 11 O -0.48 -18.77 13.05 -88.50 -1.16 -19.92 14 12 C -0.13 -5.34 9.36 22.40 0.21 -5.13 14 13 C -0.07 -2.96 6.58 42.49 0.28 -2.68 14 14 C 0.35 11.80 5.71 71.24 0.41 12.21 14 15 F -0.21 -8.30 17.04 44.97 0.77 -7.54 14 16 F -0.20 -6.68 16.43 44.97 0.74 -5.94 14 17 N -0.49 -25.22 9.93 -182.97 -1.82 -27.04 14 18 C 0.21 11.15 7.86 85.38 0.67 11.82 14 19 F -0.13 -7.18 14.31 44.97 0.64 -6.54 14 20 H 0.30 14.13 8.30 -92.71 -0.77 13.36 14 21 H 0.39 10.71 9.06 -74.05 -0.67 10.04 14 22 H 0.16 5.20 7.57 -2.91 -0.02 5.18 14 23 H 0.16 3.91 8.14 -2.39 -0.02 3.89 14 Total: -1.00 -64.07 228.66 4.26 -59.81 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.62 Total: 12.43 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 2.19 Total: -1.92 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -1.57 Total: -68.57 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -1.16 Total: -19.92 kcal Atomic # 9 Polarization: -22.16 SS G_CDS: 2.15 Total: -20.01 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -64.07 4.26 -59.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238676714.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.801 kcal (2) G-P(sol) polarization free energy of solvation -64.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds