Wall clock time and date at job start Mon Mar 30 2020 03:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86803 * 119.99663 * 2 1 4 4 H 1.48501 * 109.47114 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47204 * 119.99927 * 3 2 1 6 6 H 1.48505 * 109.46661 * 239.99998 * 3 2 1 7 7 C 1.40012 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99768 * 155.66506 * 7 2 1 9 9 C 1.41558 * 120.00403 * 335.65979 * 7 2 1 10 10 C 1.40905 * 120.99053 * 329.26014 * 9 7 2 11 11 C 1.38360 * 118.87464 * 179.72764 * 10 9 7 12 12 O 1.35695 * 119.54862 * 180.25459 * 11 10 9 13 13 N 1.32444 * 120.90636 * 0.56142 * 11 10 9 14 14 C 1.32231 * 122.20458 * 359.70789 * 13 11 10 15 15 F 1.35107 * 119.48650 * 180.02562 * 14 13 11 16 16 C 1.37969 * 121.02582 * 0.02562 * 14 13 11 17 17 C 1.50707 * 120.51885 * 179.97438 * 16 14 13 18 18 F 1.39905 * 109.46704 * 22.85218 * 17 16 14 19 19 F 1.39897 * 109.46855 * 142.84894 * 17 16 14 20 20 H 0.96998 * 119.99425 * 174.14029 * 1 2 3 21 21 H 1.08007 * 120.55995 * 0.02562 * 10 9 7 22 22 H 0.96709 * 113.99920 * 270.30029 * 12 11 10 23 23 H 1.08997 * 109.47528 * 262.85294 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0952 1.6966 1.2125 6 1 3.0952 1.6964 -1.2126 7 6 2.0076 -1.2126 0.0005 8 1 3.0157 -1.2543 -0.3849 9 6 1.3942 -2.3838 0.5063 10 6 0.4410 -2.3144 1.5417 11 6 -0.1353 -3.4862 1.9990 12 8 -1.0586 -3.4347 2.9921 13 7 0.2063 -4.6580 1.4849 14 6 1.0998 -4.7692 0.5165 15 9 1.4066 -5.9926 0.0321 16 6 1.7235 -3.6555 -0.0069 17 6 2.7406 -3.7955 -1.1102 18 9 2.5286 -5.0000 -1.7896 19 9 2.6097 -2.7269 -2.0034 20 1 -0.4849 -0.8357 -0.0858 21 1 0.1615 -1.3621 1.9679 22 1 -0.6836 -3.4964 3.8814 23 1 3.7433 -3.7912 -0.6827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238683676.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:54 Heat of formation + Delta-G solvation = -190.237463 kcal Electronic energy + Delta-G solvation = -16488.065301 eV Core-core repulsion = 13078.432145 eV Total energy + Delta-G solvation = -3409.633156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.16600 -49.59431 -47.78343 -40.90544 -38.06310 -36.32383 -33.22449 -31.26291 -28.25413 -26.60401 -23.83836 -23.24266 -20.75502 -19.19772 -18.67549 -18.37003 -17.97873 -17.73387 -17.17033 -16.77302 -15.96372 -15.73025 -15.41114 -14.75162 -14.65939 -14.32864 -14.20997 -13.97186 -13.66399 -12.98430 -12.85876 -12.60071 -12.02984 -11.98615 -11.83580 -11.18703 -10.48691 -10.43429 -9.78253 -9.42567 -6.94812 0.04771 0.49981 1.55396 1.62865 1.83859 2.27819 2.34093 2.44481 2.92214 3.07575 3.32705 3.56186 3.80056 4.15806 4.29308 4.52908 4.79774 4.96255 5.21801 5.38751 5.72152 5.74981 6.14964 6.50916 6.72322 6.93325 7.76821 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.012755 C = 0.008636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.932322 B = 2194.605132 C = 3241.370410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.007 3.993 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.252 1.252 6 H -0.254 1.254 7 C -0.478 4.478 8 H 0.105 0.895 9 C 0.125 3.875 10 C -0.282 4.282 11 C 0.347 3.653 12 O -0.491 6.491 13 N -0.648 5.648 14 C 0.366 3.634 15 F -0.121 7.121 16 C -0.377 4.377 17 C 0.341 3.659 18 F -0.214 7.214 19 F -0.203 7.203 20 H 0.286 0.714 21 H 0.123 0.877 22 H 0.414 0.586 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.089 1.073 1.742 6.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.213 4.213 3 Si 0.934 3.066 4 H -0.198 1.198 5 H -0.176 1.176 6 H -0.178 1.178 7 C -0.505 4.505 8 H 0.123 0.877 9 C 0.118 3.882 10 C -0.306 4.306 11 C 0.177 3.823 12 O -0.300 6.300 13 N -0.380 5.380 14 C 0.214 3.786 15 F -0.100 7.100 16 C -0.385 4.385 17 C 0.287 3.713 18 F -0.195 7.195 19 F -0.184 7.184 20 H 0.098 0.902 21 H 0.141 0.859 22 H 0.274 0.726 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.967 1.972 1.686 5.604 hybrid contribution 0.264 -1.719 -0.078 1.741 sum 5.230 0.253 1.609 5.478 Atomic orbital electron populations 1.70552 1.09218 1.33705 1.26660 1.28753 0.95377 1.07852 0.89364 0.82976 0.74828 0.68927 0.79823 1.19800 1.17612 1.17826 1.21107 1.03232 0.93139 1.33070 0.87699 1.17455 0.89700 0.91725 0.89361 1.21971 1.06494 0.97903 1.04262 1.18401 0.87176 0.86624 0.90086 1.84693 1.32564 1.94918 1.17842 1.66077 1.22092 1.30990 1.18825 1.17156 0.91536 0.79385 0.90550 1.91553 1.90845 1.42086 1.85520 1.20957 1.14526 0.94333 1.08671 1.19967 0.99722 0.70148 0.81469 1.92939 1.96820 1.47286 1.82481 1.92959 1.97514 1.57116 1.70786 0.90199 0.85941 0.72648 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.97 12.54 21.83 0.27 -37.69 14 2 C 0.01 0.32 4.97 85.28 0.42 0.74 14 3 Si 1.12 36.47 30.00 68.60 2.06 38.52 14 4 H -0.27 -9.04 7.11 99.48 0.71 -8.33 14 5 H -0.25 -7.48 7.11 99.48 0.71 -6.78 14 6 H -0.25 -7.65 7.11 99.48 0.71 -6.94 14 7 C -0.48 -21.86 7.28 23.52 0.17 -21.69 14 8 H 0.11 4.49 6.84 -2.91 -0.02 4.47 14 9 C 0.13 6.00 5.16 -21.12 -0.11 5.89 14 10 C -0.28 -13.33 8.03 22.95 0.18 -13.15 14 11 C 0.35 15.91 7.73 84.63 0.65 16.57 14 12 O -0.49 -19.03 13.55 -90.15 -1.22 -20.25 14 13 N -0.65 -31.42 10.37 -310.45 -3.22 -34.64 14 14 C 0.37 17.34 8.27 84.57 0.70 18.04 14 15 F -0.12 -5.41 15.21 44.97 0.68 -4.73 14 16 C -0.38 -17.36 5.80 -19.24 -0.11 -17.48 14 17 C 0.34 13.56 5.24 71.24 0.37 13.93 14 18 F -0.21 -8.67 15.22 44.97 0.68 -7.98 14 19 F -0.20 -8.65 14.75 44.97 0.66 -7.99 14 20 H 0.29 14.87 6.87 -92.71 -0.64 14.24 14 21 H 0.12 5.81 6.99 -2.91 -0.02 5.79 14 22 H 0.41 10.97 9.06 -74.05 -0.67 10.30 14 23 H 0.14 4.44 8.14 -2.39 -0.02 4.42 14 Total: -1.00 -57.68 223.35 2.96 -54.72 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.75 Total: 17.17 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 2.29 Total: 2.87 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -2.95 Total: -72.33 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.22 Total: -20.25 kcal Atomic # 9 Polarization: -22.73 SS G_CDS: 2.03 Total: -20.70 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.06 Total: 38.52 kcal Total: -57.68 2.96 -54.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238683676.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.518 kcal (2) G-P(sol) polarization free energy of solvation -57.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds