Wall clock time and date at job start Mon Mar 30 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48509 * 109.46976 * 274.76827 * 3 2 1 5 5 H 1.48498 * 109.47216 * 34.76305 * 3 2 1 6 6 H 1.48498 * 109.47315 * 154.77207 * 3 2 1 7 7 C 1.39910 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00276 * 163.66756 * 7 2 1 9 9 C 1.41350 * 119.99835 * 343.67314 * 7 2 1 10 10 C 1.41131 * 120.60069 * 335.14966 * 9 7 2 11 11 C 1.38242 * 118.19226 * 180.02562 * 10 9 7 12 12 O 1.35948 * 120.34741 * 179.97438 * 11 10 9 13 13 C 1.39552 * 119.30055 * 359.97438 * 11 10 9 14 14 F 1.35101 * 119.41346 * 180.02562 * 13 11 10 15 15 N 1.32188 * 121.17518 * 0.02562 * 13 11 10 16 16 C 1.31528 * 121.99023 * 0.02562 * 15 13 11 17 17 C 1.50700 * 119.72426 * 179.97438 * 16 15 13 18 18 F 1.39907 * 109.46909 * 119.97929 * 17 16 15 19 19 F 1.39899 * 109.47100 * 239.97673 * 17 16 15 20 20 H 0.97004 * 120.00628 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.90287 * 359.74910 * 10 9 7 22 22 H 0.96702 * 114.00271 * 90.00097 * 12 11 10 23 23 H 1.08999 * 109.47336 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3892 2.1046 -1.3953 5 1 1.4939 2.6215 0.7983 6 1 3.5868 1.4132 0.5967 7 6 2.0081 -1.2116 0.0005 8 1 3.0554 -1.2306 -0.2624 9 6 1.3442 -2.4109 0.3452 10 6 0.1956 -2.3862 1.1649 11 6 -0.4141 -3.5885 1.4714 12 8 -1.5226 -3.6157 2.2578 13 6 0.1205 -4.7739 0.9649 14 9 -0.4738 -5.9501 1.2624 15 7 1.1979 -4.7664 0.1991 16 6 1.8169 -3.6512 -0.1219 17 6 3.0419 -3.7021 -0.9982 18 9 2.8127 -2.9626 -2.1635 19 9 4.1315 -3.1597 -0.3084 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1938 -1.4538 1.5462 22 1 -2.3539 -3.5475 1.7684 23 1 3.2576 -4.7376 -1.2614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238683882.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:57 Heat of formation + Delta-G solvation = -186.710185 kcal Electronic energy + Delta-G solvation = -16339.607860 eV Core-core repulsion = 12930.127657 eV Total energy + Delta-G solvation = -3409.480202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.75322 -49.51038 -47.72363 -40.65807 -38.18565 -36.22527 -32.61837 -31.80405 -28.38379 -26.42847 -24.01902 -23.05034 -20.11049 -18.95141 -18.79904 -18.60407 -18.01257 -17.33457 -17.14124 -16.81435 -16.14070 -15.65273 -14.77796 -14.70175 -14.39888 -14.20659 -14.13748 -13.89840 -13.55298 -13.19464 -13.17004 -12.78809 -12.51782 -12.08692 -11.61727 -11.32930 -10.47218 -10.39320 -9.63389 -8.95929 -6.72481 0.15835 0.56617 1.37480 1.43410 1.54423 2.11778 2.33406 2.60195 3.12863 3.21476 3.39007 3.60066 3.93320 4.33435 4.35414 4.64702 4.80626 4.96971 5.29456 5.47968 5.63406 6.05492 6.35218 6.43927 6.78076 7.00483 7.97486 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.012219 C = 0.008628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.062177 B = 2290.939524 C = 3244.476394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.255 1.255 7 C -0.432 4.432 8 H 0.099 0.901 9 C 0.068 3.932 10 C -0.150 4.150 11 C 0.082 3.918 12 O -0.497 6.497 13 C 0.108 3.892 14 F -0.138 7.138 15 N -0.452 5.452 16 C -0.092 4.092 17 C 0.353 3.647 18 F -0.204 7.204 19 F -0.206 7.206 20 H 0.304 0.696 21 H 0.142 0.858 22 H 0.405 0.595 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 1.665 -0.926 2.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.181 1.181 6 H -0.179 1.179 7 C -0.458 4.458 8 H 0.117 0.883 9 C 0.062 3.938 10 C -0.176 4.176 11 C 0.033 3.967 12 O -0.308 6.308 13 C -0.049 4.049 14 F -0.118 7.118 15 N -0.166 5.166 16 C -0.233 4.233 17 C 0.299 3.701 18 F -0.186 7.186 19 F -0.188 7.188 20 H 0.116 0.884 21 H 0.160 0.840 22 H 0.263 0.737 23 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.487 0.974 -0.774 1.939 hybrid contribution -0.764 1.065 0.006 1.310 sum 0.723 2.039 -0.768 2.296 Atomic orbital electron populations 1.69752 1.09162 1.32485 1.29638 1.26981 0.95680 1.05145 0.90553 0.85049 0.79355 0.74782 0.80017 1.18200 1.18102 1.17877 1.20176 0.98616 0.91061 1.35963 0.88306 1.18425 0.91777 0.93644 0.89912 1.21908 0.99473 0.96503 0.99712 1.18939 0.91551 0.91431 0.94737 1.84681 1.15374 1.95892 1.34815 1.17879 0.97570 0.80918 1.08522 1.91412 1.81978 1.46119 1.92242 1.65678 1.06892 1.32755 1.11284 1.21168 1.03610 0.88642 1.09898 1.19672 0.80483 0.93068 0.76919 1.92948 1.94977 1.80963 1.49691 1.92918 1.56289 1.88857 1.80693 0.88423 0.84033 0.73674 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.35 10.93 21.82 0.24 -35.11 14 2 C 0.04 1.64 5.19 85.24 0.44 2.08 14 3 Si 0.99 33.35 29.59 68.60 2.03 35.38 14 4 H -0.26 -8.43 7.11 99.48 0.71 -7.73 14 5 H -0.26 -8.07 7.11 99.48 0.71 -7.36 14 6 H -0.26 -8.64 7.11 99.48 0.71 -7.94 14 7 C -0.43 -20.85 7.83 23.44 0.18 -20.67 14 8 H 0.10 4.70 6.03 -2.91 -0.02 4.68 14 9 C 0.07 3.42 5.56 -21.20 -0.12 3.30 14 10 C -0.15 -7.34 8.73 22.98 0.20 -7.14 14 11 C 0.08 3.78 6.73 22.59 0.15 3.94 14 12 O -0.50 -19.60 13.38 -92.96 -1.24 -20.84 14 13 C 0.11 5.21 8.43 84.96 0.72 5.93 14 14 F -0.14 -6.30 17.13 44.97 0.77 -5.53 14 15 N -0.45 -22.03 10.24 -182.31 -1.87 -23.89 14 16 C -0.09 -4.40 6.34 43.21 0.27 -4.13 14 17 C 0.35 14.46 5.05 71.24 0.36 14.82 14 18 F -0.20 -8.69 16.49 44.97 0.74 -7.95 14 19 F -0.21 -8.50 15.70 44.97 0.71 -7.79 14 20 H 0.30 11.99 8.30 -92.71 -0.77 11.22 14 21 H 0.14 6.91 6.25 -2.91 -0.02 6.90 14 22 H 0.41 11.72 9.06 -74.06 -0.67 11.05 14 23 H 0.14 4.76 8.11 -2.39 -0.02 4.75 14 Total: -1.00 -56.25 226.39 4.21 -52.04 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.63 Total: 15.57 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 2.21 Total: -1.87 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -1.63 Total: -59.01 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -1.24 Total: -20.84 kcal Atomic # 9 Polarization: -23.49 SS G_CDS: 2.22 Total: -21.27 kcal Atomic # 14 Polarization: 33.35 SS G_CDS: 2.03 Total: 35.38 kcal Total: -56.25 4.21 -52.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238683882.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.669 kcal (2) G-P(sol) polarization free energy of solvation -56.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds