Wall clock time and date at job start Mon Mar 30 2020 03:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86802 * 120.00202 * 2 1 4 4 H 1.48501 * 109.46868 * 85.54296 * 3 2 1 5 5 H 1.48500 * 109.46926 * 205.54399 * 3 2 1 6 6 H 1.48499 * 109.46787 * 325.54529 * 3 2 1 7 7 C 1.40034 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00612 * 163.24815 * 7 2 1 9 9 C 1.41412 * 120.00045 * 343.24586 * 7 2 1 10 10 C 1.40907 * 121.01675 * 335.86937 * 9 7 2 11 11 C 1.38295 * 118.85144 * 179.75287 * 10 9 7 12 12 O 1.35742 * 119.52613 * 180.27245 * 11 10 9 13 13 N 1.32423 * 120.95153 * 0.53306 * 11 10 9 14 14 C 1.32020 * 122.29317 * 359.74088 * 13 11 10 15 15 C 1.50700 * 119.48853 * 179.97438 * 14 13 11 16 16 F 1.39903 * 109.46951 * 119.97375 * 15 14 13 17 17 F 1.39898 * 109.46856 * 239.97506 * 15 14 13 18 18 C 1.37979 * 121.02883 * 359.97043 * 14 13 11 19 19 F 1.35091 * 120.54589 * 180.02562 * 18 14 13 20 20 H 0.97000 * 119.99994 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.57614 * 0.02562 * 10 9 7 22 22 H 0.96703 * 114.00007 * 270.26540 * 12 11 10 23 23 H 1.08995 * 109.47045 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3949 2.1008 1.3959 5 1 3.5831 1.4147 -0.6037 6 1 1.4893 2.6236 -0.7921 7 6 2.0077 -1.2127 0.0005 8 1 3.0533 -1.2328 -0.2690 9 6 1.3456 -2.4112 0.3541 10 6 0.1948 -2.3924 1.1669 11 6 -0.4201 -3.5907 1.4809 12 8 -1.5328 -3.5881 2.2583 13 7 0.0639 -4.7411 1.0382 14 6 1.1420 -4.8073 0.2792 15 6 1.6383 -6.1510 -0.1890 16 9 1.6349 -6.1881 -1.5875 17 9 2.9403 -6.3564 0.2799 18 6 1.8215 -3.6653 -0.0923 19 9 2.9235 -3.7444 -0.8698 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2028 -1.4581 1.5347 22 1 -1.3508 -3.6529 3.2059 23 1 0.9855 -6.9340 0.1968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238684101.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:46 Heat of formation + Delta-G solvation = -190.321034 kcal Electronic energy + Delta-G solvation = -16231.744083 eV Core-core repulsion = 12822.107302 eV Total energy + Delta-G solvation = -3409.636780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.15704 -49.32413 -48.02103 -40.76502 -37.79299 -36.35620 -33.01576 -31.25161 -28.33362 -27.25729 -23.59510 -23.28534 -20.20884 -19.04263 -18.63621 -18.30130 -18.18039 -17.64180 -17.28502 -16.66680 -16.39912 -15.81446 -14.91695 -14.84286 -14.59300 -14.41465 -14.01376 -13.69310 -13.54884 -13.32737 -13.08924 -12.73512 -12.47478 -12.15312 -12.02196 -11.42788 -10.36511 -10.27487 -9.59301 -8.94217 -6.84683 0.15483 0.48975 1.35656 1.44427 1.52102 2.10524 2.32742 2.39771 3.00721 3.12280 3.33785 3.49810 3.90707 4.04285 4.40980 4.52472 4.89840 4.96958 5.00108 5.55052 5.58682 6.09433 6.33885 6.45236 6.86561 7.09828 7.99483 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.009925 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.535718 B = 2820.472403 C = 3566.007414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.040 3.960 3 Si 0.998 3.002 4 H -0.252 1.252 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.089 0.911 9 C 0.080 3.920 10 C -0.214 4.214 11 C 0.295 3.705 12 O -0.488 6.488 13 N -0.557 5.557 14 C 0.050 3.950 15 C 0.332 3.668 16 F -0.204 7.204 17 F -0.201 7.201 18 C -0.068 4.068 19 F -0.149 7.149 20 H 0.304 0.696 21 H 0.139 0.861 22 H 0.409 0.591 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -1.542 3.115 3.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.181 4.181 3 Si 0.816 3.184 4 H -0.176 1.176 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.107 0.893 9 C 0.072 3.928 10 C -0.238 4.238 11 C 0.122 3.878 12 O -0.297 6.297 13 N -0.282 5.282 14 C -0.087 4.087 15 C 0.277 3.723 16 F -0.186 7.186 17 F -0.183 7.183 18 C -0.094 4.094 19 F -0.128 7.128 20 H 0.116 0.884 21 H 0.157 0.843 22 H 0.268 0.732 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.081 -2.118 2.806 3.517 hybrid contribution 1.042 1.320 -0.093 1.684 sum 1.123 -0.798 2.713 3.042 Atomic orbital electron populations 1.69753 1.09280 1.32449 1.29970 1.26988 0.95646 1.05037 0.90416 0.84945 0.78918 0.74335 0.80208 1.17582 1.18198 1.18406 1.19947 0.98534 0.91442 1.38628 0.89303 1.18115 0.92626 0.91784 0.90321 1.22100 0.99101 0.98338 1.04239 1.18791 0.86919 0.87710 0.94368 1.84721 1.26991 1.95469 1.22469 1.66399 1.13424 1.30352 1.18032 1.20979 0.94214 0.93712 0.99840 1.20305 0.81136 0.95880 0.74933 1.92971 1.96664 1.97460 1.31472 1.92968 1.41296 1.95760 1.88234 1.18767 0.91306 0.95699 1.03606 1.91306 1.51291 1.97025 1.73163 0.88433 0.84340 0.73196 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.30 10.94 21.84 0.24 -37.06 14 2 C 0.04 1.82 5.20 85.29 0.44 2.26 14 3 Si 1.00 34.06 29.59 68.60 2.03 36.09 14 4 H -0.25 -8.13 7.11 99.48 0.71 -7.42 14 5 H -0.26 -8.85 7.11 99.48 0.71 -8.14 14 6 H -0.26 -8.33 7.11 99.48 0.71 -7.63 14 7 C -0.46 -23.27 8.87 23.49 0.21 -23.06 14 8 H 0.09 4.47 7.79 -2.91 -0.02 4.45 14 9 C 0.08 4.20 5.60 -21.07 -0.12 4.08 14 10 C -0.21 -10.63 8.71 22.94 0.20 -10.43 14 11 C 0.29 13.53 7.73 84.62 0.65 14.18 14 12 O -0.49 -18.66 13.56 -90.66 -1.23 -19.89 14 13 N -0.56 -25.48 10.24 -297.21 -3.04 -28.52 14 14 C 0.05 2.29 6.28 42.47 0.27 2.56 14 15 C 0.33 12.53 5.25 71.24 0.37 12.91 14 16 F -0.20 -8.13 17.05 44.97 0.77 -7.36 14 17 F -0.20 -7.73 17.05 44.97 0.77 -6.96 14 18 C -0.07 -3.49 7.15 22.98 0.16 -3.33 14 19 F -0.15 -7.60 15.99 44.97 0.72 -6.88 14 20 H 0.30 12.57 8.29 -92.71 -0.77 11.81 14 21 H 0.14 6.88 6.22 -2.91 -0.02 6.87 14 22 H 0.41 10.70 9.06 -74.06 -0.67 10.03 14 23 H 0.17 4.84 8.10 -2.39 -0.02 4.82 14 Total: -1.00 -59.70 229.99 3.06 -56.64 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.62 Total: 14.78 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 2.19 Total: -0.83 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -2.80 Total: -65.58 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -1.23 Total: -19.89 kcal Atomic # 9 Polarization: -23.46 SS G_CDS: 2.25 Total: -21.20 kcal Atomic # 14 Polarization: 34.06 SS G_CDS: 2.03 Total: 36.09 kcal Total: -59.70 3.06 -56.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684101.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.683 kcal (2) G-P(sol) polarization free energy of solvation -59.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds