Wall clock time and date at job start Mon Mar 30 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86800 * 120.00230 * 2 1 4 4 H 1.48504 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47239 * 300.00502 * 3 2 1 6 6 H 1.48506 * 109.46942 * 60.00340 * 3 2 1 7 7 C 1.39937 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00078 * 197.43340 * 7 2 1 9 9 C 1.41286 * 119.99652 * 17.42516 * 7 2 1 10 10 C 1.40986 * 120.64918 * 23.55999 * 9 7 2 11 11 C 1.38436 * 118.19000 * 179.97438 * 10 9 7 12 12 O 1.35946 * 120.30728 * 180.02562 * 11 10 9 13 13 C 1.39139 * 119.38977 * 359.97438 * 11 10 9 14 14 C 1.50702 * 119.36205 * 179.97438 * 13 11 10 15 15 F 1.39895 * 109.46972 * 210.00217 * 14 13 11 16 16 F 1.39893 * 109.46905 * 330.00562 * 14 13 11 17 17 N 1.32041 * 121.28062 * 0.02562 * 13 11 10 18 18 C 1.31717 * 121.99107 * 359.97438 * 17 13 11 19 19 F 1.35101 * 119.77872 * 179.97438 * 18 17 13 20 20 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.90025 * 0.24718 * 10 9 7 22 22 H 0.96695 * 114.00434 * 89.99559 * 12 11 10 23 23 H 1.08995 * 109.46688 * 90.00373 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7026 1.3463 0.0006 5 1 1.8837 2.3965 -1.2124 6 1 1.8838 2.3964 1.2126 7 6 2.0082 -1.2119 -0.0005 8 1 3.0510 -1.2334 0.2797 9 6 1.3504 -2.4072 -0.3675 10 6 0.2007 -2.3737 -1.1829 11 6 -0.4030 -3.5752 -1.5118 12 8 -1.5134 -3.5931 -2.2959 13 6 0.1377 -4.7646 -1.0333 14 6 -0.5204 -6.0723 -1.3912 15 9 -0.3134 -6.9958 -0.3610 16 9 -1.8933 -5.8703 -1.5678 17 7 1.2157 -4.7698 -0.2708 18 6 1.8319 -3.6579 0.0741 19 9 2.9316 -3.7152 0.8567 20 1 -0.4849 0.8400 0.0004 21 1 -0.1955 -1.4363 -1.5448 22 1 -1.3257 -3.6570 -3.2423 23 1 -0.0877 -6.4557 -2.3152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238684141.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:49 Heat of formation + Delta-G solvation = -168.036367 kcal Electronic energy + Delta-G solvation = -16176.475271 eV Core-core repulsion = 12767.804826 eV Total energy + Delta-G solvation = -3408.670445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.18194 -47.49839 -46.20796 -38.92321 -36.20002 -34.61086 -31.14032 -29.29817 -27.39256 -24.30916 -22.03330 -21.40733 -18.28588 -17.15593 -16.96314 -16.93255 -16.62769 -15.67177 -15.42650 -14.69205 -14.48943 -14.11770 -13.11980 -13.04880 -12.79085 -12.54600 -12.31980 -11.97649 -11.85587 -11.60855 -11.50401 -11.05627 -10.82236 -10.56067 -10.18374 -9.73161 -8.64412 -8.40614 -7.76997 -7.25240 -4.91401 1.99994 2.43091 2.83144 2.84922 2.91450 3.58365 4.04262 4.35262 4.73419 4.82103 5.11838 5.24962 5.59829 5.69671 6.25030 6.41143 6.62210 6.75636 7.02324 7.38292 7.46088 7.89881 8.15814 8.16836 8.42708 8.89821 9.61949 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.008697 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.452098 B = 3218.740728 C = 3841.702780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.069 3.931 3 Si 0.924 3.076 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.415 4.415 8 H 0.097 0.903 9 C 0.069 3.931 10 C -0.157 4.157 11 C 0.105 3.895 12 O -0.490 6.490 13 C -0.106 4.106 14 C 0.347 3.653 15 F -0.204 7.204 16 F -0.197 7.197 17 N -0.448 5.448 18 C 0.171 3.829 19 F -0.132 7.132 20 H 0.293 0.707 21 H 0.146 0.854 22 H 0.374 0.626 23 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -0.554 -5.110 5.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.154 4.154 3 Si 0.747 3.253 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.442 4.442 8 H 0.115 0.885 9 C 0.062 3.938 10 C -0.182 4.182 11 C 0.058 3.942 12 O -0.297 6.297 13 C -0.243 4.243 14 C 0.292 3.708 15 F -0.185 7.185 16 F -0.178 7.178 17 N -0.162 5.162 18 C 0.009 3.991 19 F -0.112 7.112 20 H 0.104 0.896 21 H 0.163 0.837 22 H 0.228 0.772 23 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.107 -1.161 -4.236 4.393 hybrid contribution 0.290 1.398 -0.414 1.487 sum 0.182 0.237 -4.649 4.659 Atomic orbital electron populations 1.69796 1.07989 1.30849 1.29616 1.26183 0.94970 1.02434 0.91809 0.85971 0.81047 0.79156 0.79174 1.17683 1.19075 1.19270 1.19826 0.98708 0.90438 1.35253 0.88451 1.18210 0.92674 0.91846 0.91069 1.21752 0.97817 0.97087 1.01564 1.18843 0.87240 0.92386 0.95774 1.84895 1.28628 1.96281 1.19908 1.20445 0.99115 0.92996 1.11735 1.19713 0.77008 0.85308 0.88748 1.92941 1.94749 1.67956 1.62863 1.92988 1.33547 1.95533 1.95761 1.65701 1.07612 1.31871 1.11004 1.18043 0.90327 0.89438 1.01266 1.91414 1.50502 1.96910 1.72393 0.89560 0.83695 0.77180 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.68 10.92 55.55 0.61 -17.08 14 2 C 0.07 1.55 5.18 -17.34 -0.09 1.46 14 3 Si 0.92 16.49 29.59 -169.99 -5.03 11.46 14 4 H -0.25 -4.50 7.11 56.52 0.40 -4.10 14 5 H -0.27 -4.62 7.11 56.52 0.40 -4.21 14 6 H -0.27 -4.74 7.11 56.52 0.40 -4.34 14 7 C -0.41 -10.08 8.81 -37.79 -0.33 -10.42 14 8 H 0.10 2.28 7.73 -52.49 -0.41 1.88 14 9 C 0.07 1.74 5.60 -106.61 -0.60 1.15 14 10 C -0.16 -3.80 8.75 -38.47 -0.34 -4.14 14 11 C 0.10 2.36 6.60 -39.17 -0.26 2.11 14 12 O -0.49 -9.50 11.41 -19.57 -0.22 -9.73 14 13 C -0.11 -2.43 6.61 -82.17 -0.54 -2.97 14 14 C 0.35 6.73 5.63 36.01 0.20 6.93 14 15 F -0.20 -4.27 17.05 2.25 0.04 -4.24 14 16 F -0.20 -3.88 15.27 2.25 0.03 -3.85 14 17 N -0.45 -11.27 9.93 -8.96 -0.09 -11.36 14 18 C 0.17 4.39 8.44 -16.51 -0.14 4.25 14 19 F -0.13 -3.31 16.74 2.25 0.04 -3.28 14 20 H 0.29 6.05 8.30 -40.82 -0.34 5.71 14 21 H 0.15 3.51 6.20 -52.48 -0.33 3.18 14 22 H 0.37 5.13 9.06 45.56 0.41 5.54 14 23 H 0.10 1.55 8.14 -51.93 -0.42 1.13 14 LS Contribution 227.27 15.07 3.42 3.42 Total: -1.00 -28.32 227.27 -3.17 -31.49 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 0.13 Total: 4.78 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.09 Total: -1.64 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 0.52 Total: -28.44 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.22 Total: -9.73 kcal Atomic # 9 Polarization: -11.47 SS G_CDS: 0.11 Total: -11.36 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.32 -3.17 -31.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684141.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.546 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds