Wall clock time and date at job start Mon Mar 30 2020 03:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86804 * 120.00284 * 2 1 4 4 H 1.48500 * 109.46975 * 270.00035 * 3 2 1 5 5 H 1.48506 * 109.46914 * 29.99906 * 3 2 1 6 6 H 1.48498 * 109.46871 * 149.99979 * 3 2 1 7 7 C 1.39892 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99620 * 165.14910 * 7 2 1 9 9 C 1.41251 * 119.99829 * 345.14898 * 7 2 1 10 10 C 1.41244 * 120.58545 * 332.89364 * 9 7 2 11 11 C 1.36817 * 118.37236 * 180.02562 * 10 9 7 12 12 F 1.35102 * 120.26875 * 180.02562 * 11 10 9 13 13 C 1.39675 * 119.46724 * 359.97438 * 11 10 9 14 14 O 1.35530 * 119.42259 * 180.02562 * 13 11 10 15 15 N 1.32513 * 121.15568 * 0.28383 * 13 11 10 16 16 C 1.31543 * 121.77529 * 359.42761 * 15 13 11 17 17 C 1.50697 * 119.80594 * 180.31512 * 16 15 13 18 18 F 1.39898 * 109.47140 * 21.35763 * 17 16 15 19 19 F 1.39891 * 109.47346 * 141.36148 * 17 16 15 20 20 H 0.97005 * 120.00163 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.81615 * 0.03633 * 10 9 7 22 22 H 0.96698 * 113.99834 * 90.00364 * 14 13 11 23 23 H 1.09006 * 109.46572 * 261.36614 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2115 0.0005 8 1 3.0611 -1.2272 -0.2392 9 6 1.3373 -2.4142 0.3146 10 6 0.1972 -2.4045 1.1484 11 6 -0.4172 -3.5956 1.4235 12 9 -1.5107 -3.6307 2.2161 13 6 0.0946 -4.7749 0.8775 14 8 -0.5151 -5.9543 1.1502 15 7 1.1687 -4.7616 0.1016 16 6 1.7929 -3.6431 -0.1980 17 6 3.0066 -3.6786 -1.0905 18 9 2.9954 -4.8557 -1.8464 19 9 2.9873 -2.5735 -1.9482 20 1 -0.4850 0.8401 0.0004 21 1 -0.1804 -1.4795 1.5585 22 1 -1.2092 -6.1929 0.5208 23 1 3.9084 -3.6481 -0.4788 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238684630.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:42 Heat of formation + Delta-G solvation = -186.220683 kcal Electronic energy + Delta-G solvation = -16310.569967 eV Core-core repulsion = 12901.110991 eV Total energy + Delta-G solvation = -3409.458976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.80709 -49.68054 -47.70472 -40.65147 -37.98284 -35.92619 -32.76167 -32.01416 -28.30841 -26.43218 -23.96871 -22.94881 -19.86696 -19.60337 -18.62451 -18.28550 -17.88523 -17.47895 -17.23633 -16.70202 -16.36770 -15.56037 -14.88197 -14.64187 -14.43608 -14.24905 -14.00123 -13.81596 -13.62161 -13.26209 -12.95197 -12.52534 -12.41096 -12.12420 -11.82554 -11.31672 -10.47011 -10.26278 -9.59433 -8.92155 -6.69367 0.20070 0.57548 1.41056 1.47554 1.57895 2.13186 2.34329 2.75691 3.12674 3.22363 3.53300 3.56225 3.93848 4.25722 4.38199 4.63182 4.88061 4.98936 5.10074 5.43123 5.62203 6.10453 6.34301 6.46110 6.83768 7.21811 8.00907 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.012435 C = 0.008290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.722229 B = 2251.143048 C = 3376.877937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.033 3.967 3 Si 0.994 3.006 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.246 1.246 7 C -0.421 4.421 8 H 0.113 0.887 9 C 0.076 3.924 10 C -0.173 4.173 11 C 0.068 3.932 12 F -0.146 7.146 13 C 0.110 3.890 14 O -0.481 6.481 15 N -0.432 5.432 16 C -0.094 4.094 17 C 0.351 3.649 18 F -0.211 7.211 19 F -0.197 7.197 20 H 0.302 0.698 21 H 0.138 0.862 22 H 0.390 0.610 23 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 2.103 -0.362 3.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.187 4.187 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.169 1.169 7 C -0.448 4.448 8 H 0.131 0.869 9 C 0.071 3.929 10 C -0.199 4.199 11 C 0.045 3.955 12 F -0.125 7.125 13 C -0.071 4.071 14 O -0.286 6.286 15 N -0.148 5.148 16 C -0.238 4.238 17 C 0.297 3.703 18 F -0.192 7.192 19 F -0.179 7.179 20 H 0.114 0.886 21 H 0.156 0.844 22 H 0.245 0.755 23 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.667 1.409 -0.202 3.934 hybrid contribution -1.138 1.125 -0.025 1.601 sum 2.529 2.535 -0.227 3.588 Atomic orbital electron populations 1.69811 1.09556 1.32455 1.30126 1.27084 0.95580 1.05493 0.90534 0.84987 0.79381 0.74382 0.79997 1.18420 1.18974 1.16870 1.20218 0.98579 0.90287 1.35665 0.86892 1.18205 0.91453 0.93704 0.89566 1.21376 1.00475 0.95842 1.02230 1.18564 0.86353 0.95117 0.95429 1.91372 1.51665 1.97430 1.71998 1.18315 0.96744 0.84637 1.07427 1.84775 1.54152 1.36113 1.53602 1.66149 1.06487 1.31343 1.10800 1.21500 1.04850 0.89115 1.08310 1.19888 0.97576 0.70168 0.82676 1.92910 1.97838 1.49504 1.78937 1.92966 1.97695 1.54193 1.73017 0.88622 0.84427 0.75511 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.20 10.99 21.82 0.24 -35.96 14 2 C 0.03 1.41 5.20 85.24 0.44 1.86 14 3 Si 0.99 31.81 29.59 68.60 2.03 33.84 14 4 H -0.26 -8.20 7.11 99.48 0.71 -7.49 14 5 H -0.27 -8.18 7.11 99.48 0.71 -7.47 14 6 H -0.25 -7.49 7.11 99.48 0.71 -6.78 14 7 C -0.42 -19.02 7.39 23.41 0.17 -18.85 14 8 H 0.11 4.65 6.55 -2.91 -0.02 4.64 14 9 C 0.08 3.73 5.53 -21.19 -0.12 3.61 14 10 C -0.17 -8.58 8.70 22.68 0.20 -8.38 14 11 C 0.07 3.31 7.29 22.28 0.16 3.47 14 12 F -0.15 -6.68 17.11 44.97 0.77 -5.91 14 13 C 0.11 5.29 7.75 84.94 0.66 5.95 14 14 O -0.48 -20.31 13.41 -88.34 -1.18 -21.49 14 15 N -0.43 -21.17 9.88 -294.47 -2.91 -24.08 14 16 C -0.09 -4.45 6.65 43.21 0.29 -4.16 14 17 C 0.35 13.91 5.20 71.23 0.37 14.28 14 18 F -0.21 -8.64 16.98 44.97 0.76 -7.87 14 19 F -0.20 -8.11 14.70 44.97 0.66 -7.44 14 20 H 0.30 12.22 8.30 -92.70 -0.77 11.45 14 21 H 0.14 6.87 6.35 -2.91 -0.02 6.85 14 22 H 0.39 12.55 9.06 -74.06 -0.67 11.88 14 23 H 0.15 4.54 8.14 -2.38 -0.02 4.52 14 Total: -1.00 -56.71 226.08 3.17 -53.54 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.62 Total: 17.60 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 2.18 Total: -2.23 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -2.67 Total: -60.04 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.18 Total: -21.49 kcal Atomic # 9 Polarization: -23.42 SS G_CDS: 2.19 Total: -21.22 kcal Atomic # 14 Polarization: 31.81 SS G_CDS: 2.03 Total: 33.84 kcal Total: -56.71 3.17 -53.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684630.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.677 kcal (2) G-P(sol) polarization free energy of solvation -56.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds