Wall clock time and date at job start Mon Mar 30 2020 03:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86795 * 119.99790 * 2 1 4 4 H 1.48495 * 109.47273 * 240.27265 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27475 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27462 * 3 2 1 7 7 C 1.40005 * 120.00194 * 180.27485 * 2 1 3 8 8 H 1.07999 * 120.00015 * 179.72741 * 7 2 1 9 9 C 1.41336 * 119.99617 * 359.72601 * 7 2 1 10 10 C 1.40558 * 119.76837 * 179.72682 * 9 7 2 11 11 C 1.38604 * 118.94592 * 179.75121 * 10 9 7 12 12 O 1.35816 * 120.76639 * 180.24245 * 11 10 9 13 13 C 1.39793 * 118.46277 * 0.50868 * 11 10 9 14 14 F 1.35103 * 120.27710 * 179.72598 * 13 11 10 15 15 C 1.38829 * 119.44182 * 359.75544 * 13 11 10 16 16 C 1.50700 * 119.48569 * 179.97438 * 15 13 11 17 17 F 1.39898 * 109.47424 * 209.97616 * 16 15 13 18 18 F 1.39905 * 109.47264 * 329.98076 * 16 15 13 19 19 N 1.31470 * 121.02673 * 359.96832 * 15 13 11 20 20 H 0.97000 * 120.00406 * 359.72753 * 1 2 3 21 21 H 1.08001 * 120.52759 * 0.02562 * 10 9 7 22 22 H 0.96705 * 113.99407 * 270.28151 * 12 11 10 23 23 H 1.09003 * 109.47164 * 89.97088 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0903 1.6993 -1.2158 5 1 1.2765 2.7465 0.0067 6 1 3.1004 1.6936 1.2092 7 6 2.0077 -1.2124 -0.0058 8 1 3.0877 -1.2124 -0.0103 9 6 1.3010 -2.4364 -0.0058 10 6 2.0086 -3.6508 -0.0175 11 6 1.2985 -4.8411 -0.0121 12 8 1.9447 -6.0357 -0.0180 13 6 -0.0982 -4.7836 -0.0060 14 9 -0.8269 -5.9213 -0.0062 15 6 -0.7303 -3.5475 -0.0005 16 6 -2.2359 -3.4843 0.0054 17 9 -2.6565 -2.3216 -0.6490 18 9 -2.7523 -4.6042 -0.6553 19 7 -0.0357 -2.4313 -0.0002 20 1 -0.4851 0.8400 0.0040 21 1 3.0886 -3.6564 -0.0260 22 1 2.1282 -6.3791 -0.9032 23 1 -2.5951 -3.4722 1.0345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238684935.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:46 Heat of formation + Delta-G solvation = -179.557610 kcal Electronic energy + Delta-G solvation = -16312.836146 eV Core-core repulsion = 12903.666103 eV Total energy + Delta-G solvation = -3409.170043 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.97786 -49.28814 -47.84146 -40.51670 -38.24069 -35.60277 -32.74360 -31.25026 -28.51185 -26.88419 -23.62698 -22.99190 -20.19966 -19.15700 -18.45818 -18.19047 -17.74320 -17.60369 -17.17854 -16.66768 -16.25750 -15.46650 -14.82435 -14.74442 -14.39229 -14.24109 -14.12834 -13.98103 -13.56389 -13.17889 -12.88580 -12.75028 -12.35186 -12.08280 -11.43775 -11.20758 -10.21412 -9.94165 -9.68190 -8.49721 -6.69328 0.31652 0.55925 1.43983 1.51490 1.57175 2.19141 2.50310 2.70051 3.11089 3.23400 3.47192 3.67876 3.86879 4.04656 4.37941 4.60597 4.86731 5.07899 5.11640 5.34572 5.65507 6.04019 6.38819 6.65746 6.80239 7.68992 8.27232 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028067 B = 0.010483 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.383266 B = 2670.326300 C = 3626.735319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.019 3.981 3 Si 0.995 3.005 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.427 4.427 8 H 0.108 0.892 9 C 0.218 3.782 10 C -0.269 4.269 11 C 0.142 3.858 12 O -0.496 6.496 13 C -0.133 4.133 14 F -0.150 7.150 15 C 0.061 3.939 16 C 0.330 3.670 17 F -0.196 7.196 18 F -0.201 7.201 19 N -0.470 5.470 20 H 0.287 0.713 21 H 0.138 0.862 22 H 0.408 0.592 23 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -1.173 -0.232 1.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.205 4.205 3 Si 0.814 3.186 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.456 4.456 8 H 0.126 0.874 9 C 0.095 3.905 10 C -0.293 4.293 11 C 0.091 3.909 12 O -0.308 6.308 13 C -0.159 4.159 14 F -0.129 7.129 15 C -0.088 4.088 16 C 0.276 3.724 17 F -0.177 7.177 18 F -0.183 7.183 19 N -0.184 5.184 20 H 0.099 0.901 21 H 0.156 0.844 22 H 0.266 0.734 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.179 -0.201 0.334 0.429 hybrid contribution 0.465 -0.654 -0.652 1.034 sum 0.644 -0.855 -0.319 1.117 Atomic orbital electron populations 1.70179 1.09016 1.30345 1.25919 1.27129 0.95801 1.04960 0.92635 0.85049 0.78503 0.74664 0.80369 1.18020 1.19470 1.17903 1.20168 0.95682 0.89457 1.40333 0.87370 1.18891 0.87519 0.93399 0.90653 1.22216 1.00858 0.91051 1.15135 1.18392 0.87848 0.86056 0.98573 1.84661 1.77563 1.33582 1.35037 1.18440 0.89549 0.82226 1.25703 1.91325 1.77161 1.48600 1.95852 1.22044 0.96824 0.89246 1.00690 1.20208 0.87542 0.70637 0.94050 1.92979 1.90851 1.49730 1.84155 1.92970 1.87831 1.53208 1.84258 1.68457 1.08341 1.24247 1.17318 0.90148 0.84403 0.73388 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.65 11.46 21.83 0.25 -36.40 14 2 C 0.02 0.89 5.50 85.28 0.47 1.36 14 3 Si 0.99 34.16 29.56 68.60 2.03 36.19 14 4 H -0.26 -8.48 7.11 99.48 0.71 -7.77 14 5 H -0.27 -9.00 7.11 99.48 0.71 -8.29 14 6 H -0.26 -8.40 7.11 99.48 0.71 -7.70 14 7 C -0.43 -20.76 9.14 23.46 0.21 -20.55 14 8 H 0.11 4.71 7.85 -2.91 -0.02 4.69 14 9 C 0.22 11.22 6.55 40.19 0.26 11.48 14 10 C -0.27 -12.34 9.79 22.92 0.22 -12.12 14 11 C 0.14 6.30 6.77 22.73 0.15 6.46 14 12 O -0.50 -18.39 13.44 -91.48 -1.23 -19.62 14 13 C -0.13 -6.22 7.20 22.79 0.16 -6.05 14 14 F -0.15 -6.72 15.30 44.97 0.69 -6.03 14 15 C 0.06 2.97 6.59 42.75 0.28 3.25 14 16 C 0.33 13.66 5.66 71.24 0.40 14.06 14 17 F -0.20 -8.80 17.05 44.97 0.77 -8.04 14 18 F -0.20 -8.21 15.46 44.97 0.70 -7.51 14 19 N -0.47 -24.85 7.44 -177.23 -1.32 -26.16 14 20 H 0.29 13.00 8.29 -92.71 -0.77 12.23 14 21 H 0.14 5.63 8.06 -2.91 -0.02 5.60 14 22 H 0.41 10.60 9.06 -74.05 -0.67 9.93 14 23 H 0.15 5.06 8.14 -2.39 -0.02 5.04 14 Total: -1.00 -60.61 229.63 4.67 -55.94 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.61 Total: 13.73 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 2.17 Total: -2.10 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -1.07 Total: -62.57 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -1.23 Total: -19.62 kcal Atomic # 9 Polarization: -23.73 SS G_CDS: 2.15 Total: -21.58 kcal Atomic # 14 Polarization: 34.16 SS G_CDS: 2.03 Total: 36.19 kcal Total: -60.61 4.67 -55.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684935.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.614 kcal (2) G-P(sol) polarization free energy of solvation -60.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds