Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47160 * 274.98654 * 3 2 1 5 5 H 1.48501 * 109.47247 * 34.98978 * 3 2 1 6 6 H 1.48502 * 109.46972 * 154.98384 * 3 2 1 7 7 C 1.40016 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99992 * 186.28414 * 7 2 1 9 9 C 1.41402 * 120.00064 * 6.27810 * 7 2 1 10 10 C 1.40430 * 119.78795 * 173.68511 * 9 7 2 11 11 C 1.38874 * 118.96240 * 180.25744 * 10 9 7 12 12 O 1.35763 * 120.74360 * 179.72304 * 11 10 9 13 13 C 1.39396 * 118.50690 * 359.45269 * 11 10 9 14 14 C 1.50705 * 120.26141 * 180.24912 * 13 11 10 15 15 F 1.39908 * 109.46669 * 210.30255 * 14 13 11 16 16 F 1.39899 * 109.47010 * 330.29676 * 14 13 11 17 17 C 1.38892 * 119.46968 * 0.54687 * 13 11 10 18 18 F 1.35100 * 119.48945 * 179.69671 * 17 13 11 19 19 N 1.31679 * 121.01948 * 359.72182 * 17 13 11 20 20 H 0.97001 * 119.99899 * 359.97438 * 1 2 3 21 21 H 1.07995 * 120.51706 * 359.97438 * 10 9 7 22 22 H 0.96706 * 114.00219 * 89.99278 * 12 11 10 23 23 H 1.08997 * 109.47170 * 90.30204 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1073 -1.3947 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4120 0.5921 7 6 2.0075 -1.2126 -0.0005 8 1 3.0826 -1.2155 0.1018 9 6 1.3069 -2.4334 -0.1350 10 6 2.0198 -3.6359 -0.2686 11 6 1.3143 -4.8243 -0.4050 12 8 1.9668 -6.0069 -0.5422 13 6 -0.0788 -4.7763 -0.3920 14 6 -0.8837 -6.0428 -0.5314 15 9 -2.0991 -5.7558 -1.1621 16 9 -0.1676 -6.9684 -1.2980 17 6 -0.7190 -3.5513 -0.2559 18 9 -2.0691 -3.5036 -0.2495 19 7 -0.0304 -2.4356 -0.1336 20 1 -0.4850 0.8401 0.0004 21 1 3.0997 -3.6359 -0.2700 22 1 2.1570 -6.4508 0.2956 23 1 -1.0768 -6.4611 0.4564 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238685070.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = -159.574055 kcal Electronic energy + Delta-G solvation = -16278.417088 eV Core-core repulsion = 12870.113597 eV Total energy + Delta-G solvation = -3408.303491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.29889 -47.71848 -46.16748 -38.79632 -36.42770 -33.80638 -30.89140 -29.84217 -27.17258 -24.11301 -22.10143 -21.23145 -18.60386 -17.42130 -16.79289 -16.42415 -16.13692 -15.81020 -15.16839 -15.01389 -14.70781 -13.81851 -13.25738 -13.07566 -12.78498 -12.66744 -12.52054 -11.95068 -11.80904 -11.59126 -11.20955 -11.06257 -10.72948 -10.48901 -9.76761 -9.57601 -8.35762 -8.14024 -7.92344 -6.81353 -5.00223 2.16968 2.44307 2.90917 2.93681 2.96071 3.68766 4.26143 4.54344 4.70097 5.06778 5.17196 5.33640 5.45820 5.68971 6.23772 6.37403 6.74107 6.83023 6.95344 7.13786 7.48910 7.78307 8.09164 8.34462 8.46335 9.49778 9.90260 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.041884 B = 0.008464 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.352445 B = 3307.282005 C = 3914.975040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.059 3.941 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.395 4.395 8 H 0.098 0.902 9 C 0.283 3.717 10 C -0.301 4.301 11 C 0.210 3.790 12 O -0.493 6.493 13 C -0.431 4.431 14 C 0.341 3.659 15 F -0.209 7.209 16 F -0.203 7.203 17 C 0.377 3.623 18 F -0.128 7.128 19 N -0.517 5.517 20 H 0.282 0.718 21 H 0.118 0.882 22 H 0.381 0.619 23 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -3.898 2.366 4.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.170 4.170 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.424 4.424 8 H 0.116 0.884 9 C 0.161 3.839 10 C -0.324 4.324 11 C 0.161 3.839 12 O -0.302 6.302 13 C -0.440 4.440 14 C 0.287 3.713 15 F -0.191 7.191 16 F -0.185 7.185 17 C 0.212 3.788 18 F -0.107 7.107 19 N -0.236 5.236 20 H 0.094 0.906 21 H 0.136 0.864 22 H 0.236 0.764 23 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.994 -2.825 1.826 3.508 hybrid contribution 0.456 -0.253 0.241 0.575 sum 1.450 -3.078 2.068 3.982 Atomic orbital electron populations 1.70117 1.07528 1.29105 1.24268 1.26273 0.95112 1.01927 0.93688 0.86105 0.80435 0.79746 0.79528 1.19020 1.19674 1.18072 1.19905 0.95282 0.89090 1.38151 0.88441 1.18108 0.85960 0.91992 0.87878 1.22008 0.99886 0.92468 1.18055 1.17749 0.87685 0.85105 0.93392 1.84763 1.77722 1.33718 1.34034 1.20572 0.94707 0.94112 1.34586 1.19740 0.75968 0.86150 0.89419 1.92959 1.46643 1.94308 1.85151 1.92962 1.78755 1.67822 1.78926 1.17936 0.78058 0.89397 0.93439 1.91520 1.28764 1.97137 1.93276 1.68241 1.08795 1.24324 1.22253 0.90607 0.86395 0.76371 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.42 11.49 55.55 0.64 -16.78 14 2 C 0.06 1.38 5.49 -17.35 -0.10 1.29 14 3 Si 0.92 16.96 29.56 -169.99 -5.03 11.93 14 4 H -0.27 -4.89 7.11 56.52 0.40 -4.49 14 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 14 6 H -0.26 -4.59 7.11 56.52 0.40 -4.19 14 7 C -0.40 -9.66 9.13 -37.71 -0.34 -10.01 14 8 H 0.10 2.15 7.85 -52.49 -0.41 1.74 14 9 C 0.28 7.30 6.54 -85.01 -0.56 6.74 14 10 C -0.30 -6.97 9.80 -38.52 -0.38 -7.34 14 11 C 0.21 4.61 6.64 -38.92 -0.26 4.35 14 12 O -0.49 -9.17 11.58 -19.00 -0.22 -9.39 14 13 C -0.43 -9.80 5.79 -103.95 -0.60 -10.40 14 14 C 0.34 6.69 5.54 36.01 0.20 6.89 14 15 F -0.21 -4.40 15.50 2.25 0.03 -4.36 14 16 F -0.20 -4.06 15.40 2.25 0.03 -4.02 14 17 C 0.38 9.53 8.26 -17.37 -0.14 9.39 14 18 F -0.13 -3.13 15.44 2.25 0.03 -3.10 14 19 N -0.52 -14.06 7.90 -11.52 -0.09 -14.15 14 20 H 0.28 6.37 8.29 -40.82 -0.34 6.04 14 21 H 0.12 2.48 8.06 -52.49 -0.42 2.05 14 22 H 0.38 4.97 9.06 45.56 0.41 5.39 14 23 H 0.10 1.50 8.14 -51.93 -0.42 1.08 14 LS Contribution 226.80 15.07 3.42 3.42 Total: -1.00 -29.13 226.80 -3.33 -32.46 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 0.02 Total: 3.09 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.18 Total: 0.91 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.55 Total: -30.93 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.22 Total: -9.39 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 0.10 Total: -11.48 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.13 -3.33 -32.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238685070.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.112 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds