Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47160 * 274.98654 * 3 2 1 5 5 H 1.48501 * 109.47247 * 34.98978 * 3 2 1 6 6 H 1.48502 * 109.46972 * 154.98384 * 3 2 1 7 7 C 1.40016 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99992 * 186.28414 * 7 2 1 9 9 C 1.41402 * 120.00064 * 6.27810 * 7 2 1 10 10 C 1.40430 * 119.78795 * 173.68511 * 9 7 2 11 11 C 1.38874 * 118.96240 * 180.25744 * 10 9 7 12 12 O 1.35763 * 120.74360 * 179.72304 * 11 10 9 13 13 C 1.39396 * 118.50690 * 359.45269 * 11 10 9 14 14 C 1.50705 * 120.26141 * 180.24912 * 13 11 10 15 15 F 1.39908 * 109.46669 * 210.30255 * 14 13 11 16 16 F 1.39899 * 109.47010 * 330.29676 * 14 13 11 17 17 C 1.38892 * 119.46968 * 0.54687 * 13 11 10 18 18 F 1.35100 * 119.48945 * 179.69671 * 17 13 11 19 19 N 1.31679 * 121.01948 * 359.72182 * 17 13 11 20 20 H 0.97001 * 119.99899 * 359.97438 * 1 2 3 21 21 H 1.07995 * 120.51706 * 359.97438 * 10 9 7 22 22 H 0.96706 * 114.00219 * 89.99278 * 12 11 10 23 23 H 1.08997 * 109.47170 * 90.30204 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1073 -1.3947 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4120 0.5921 7 6 2.0075 -1.2126 -0.0005 8 1 3.0826 -1.2155 0.1018 9 6 1.3069 -2.4334 -0.1350 10 6 2.0198 -3.6359 -0.2686 11 6 1.3143 -4.8243 -0.4050 12 8 1.9668 -6.0069 -0.5422 13 6 -0.0788 -4.7763 -0.3920 14 6 -0.8837 -6.0428 -0.5314 15 9 -2.0991 -5.7558 -1.1621 16 9 -0.1676 -6.9684 -1.2980 17 6 -0.7190 -3.5513 -0.2559 18 9 -2.0691 -3.5036 -0.2495 19 7 -0.0304 -2.4356 -0.1336 20 1 -0.4850 0.8401 0.0004 21 1 3.0997 -3.6359 -0.2700 22 1 2.1570 -6.4508 0.2956 23 1 -1.0768 -6.4611 0.4564 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238685070.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = -179.775175 kcal Electronic energy + Delta-G solvation = -16279.293074 eV Core-core repulsion = 12870.113597 eV Total energy + Delta-G solvation = -3409.179478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.99951 -49.50652 -47.76141 -40.55251 -38.08291 -35.57253 -32.65594 -31.65838 -28.91694 -25.82612 -23.89876 -22.99219 -20.32772 -19.16477 -18.36365 -18.11024 -17.83337 -17.45335 -16.92268 -16.70471 -16.59401 -15.47705 -14.88412 -14.72043 -14.47426 -14.39328 -14.12066 -13.71095 -13.49883 -13.22326 -12.84287 -12.72648 -12.35535 -11.96645 -11.39326 -11.27050 -10.16090 -9.98352 -9.77157 -8.56574 -6.84969 0.36507 0.66457 1.40752 1.48170 1.57750 2.15008 2.51337 2.95627 3.07022 3.37022 3.50075 3.54757 3.81671 4.15871 4.46782 4.67208 4.98030 5.10162 5.23259 5.34048 5.72120 5.97408 6.38129 6.59134 6.91021 7.64314 8.19642 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.041884 B = 0.008464 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.352445 B = 3307.282005 C = 3914.975040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.016 3.984 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.243 1.243 7 C -0.420 4.420 8 H 0.115 0.885 9 C 0.252 3.748 10 C -0.311 4.311 11 C 0.220 3.780 12 O -0.490 6.490 13 C -0.432 4.432 14 C 0.341 3.659 15 F -0.219 7.219 16 F -0.204 7.204 17 C 0.353 3.647 18 F -0.132 7.132 19 N -0.555 5.555 20 H 0.288 0.712 21 H 0.136 0.864 22 H 0.410 0.590 23 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -4.291 2.667 5.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.166 1.166 7 C -0.449 4.449 8 H 0.133 0.867 9 C 0.130 3.870 10 C -0.333 4.333 11 C 0.170 3.830 12 O -0.303 6.303 13 C -0.441 4.441 14 C 0.288 3.712 15 F -0.201 7.201 16 F -0.185 7.185 17 C 0.188 3.812 18 F -0.111 7.111 19 N -0.275 5.275 20 H 0.099 0.901 21 H 0.154 0.846 22 H 0.269 0.731 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.262 -3.268 2.145 4.516 hybrid contribution 0.071 -0.260 0.141 0.304 sum 2.332 -3.528 2.286 4.808 Atomic orbital electron populations 1.70219 1.09534 1.30481 1.25585 1.27312 0.95748 1.05537 0.92295 0.84913 0.79305 0.74454 0.79471 1.18860 1.19197 1.16609 1.20393 0.96305 0.89550 1.38624 0.86681 1.18599 0.85938 0.93674 0.88760 1.22175 1.00785 0.92202 1.18162 1.17713 0.87485 0.85943 0.91835 1.84698 1.77074 1.32328 1.36171 1.20888 0.95521 0.94568 1.33126 1.20067 0.74996 0.84986 0.91190 1.92941 1.47158 1.94405 1.85571 1.92959 1.78806 1.67485 1.79262 1.18237 0.78107 0.90253 0.94565 1.91497 1.28978 1.97208 1.93441 1.68148 1.09884 1.25777 1.23682 0.90061 0.84586 0.73098 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.03 11.49 21.83 0.25 -37.78 14 2 C 0.02 0.74 5.49 85.29 0.47 1.20 14 3 Si 1.00 34.23 29.56 68.60 2.03 36.25 14 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 14 5 H -0.27 -8.86 7.11 99.48 0.71 -8.15 14 6 H -0.24 -7.69 7.11 99.48 0.71 -6.99 14 7 C -0.42 -20.56 9.13 23.48 0.21 -20.35 14 8 H 0.12 4.99 7.85 -2.91 -0.02 4.96 14 9 C 0.25 13.15 6.54 40.17 0.26 13.41 14 10 C -0.31 -14.10 9.80 22.96 0.22 -13.88 14 11 C 0.22 9.28 6.64 22.70 0.15 9.43 14 12 O -0.49 -16.69 11.58 -90.90 -1.05 -17.74 14 13 C -0.43 -19.13 5.79 -19.43 -0.11 -19.25 14 14 C 0.34 12.56 5.54 71.24 0.39 12.96 14 15 F -0.22 -8.91 15.50 44.97 0.70 -8.22 14 16 F -0.20 -7.56 15.40 44.97 0.69 -6.87 14 17 C 0.35 17.99 8.26 84.87 0.70 18.69 14 18 F -0.13 -6.57 15.44 44.97 0.69 -5.87 14 19 N -0.55 -30.84 7.90 -190.35 -1.50 -32.34 14 20 H 0.29 13.32 8.29 -92.71 -0.77 12.55 14 21 H 0.14 5.50 8.06 -2.91 -0.02 5.48 14 22 H 0.41 9.11 9.06 -74.05 -0.67 8.44 14 23 H 0.14 3.98 8.14 -2.39 -0.02 3.96 14 Total: -1.00 -63.01 226.80 4.73 -58.28 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.61 Total: 12.07 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 2.30 Total: 2.22 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.25 Total: -70.12 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.05 Total: -17.74 kcal Atomic # 9 Polarization: -23.04 SS G_CDS: 2.08 Total: -20.96 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.25 kcal Total: -63.01 4.73 -58.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238685070.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.491 kcal (2) G-P(sol) polarization free energy of solvation -63.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds