Wall clock time and date at job start Mon Mar 30 2020 03:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30759 * 1 3 3 Si 1.86795 * 120.00276 * 2 1 4 4 H 1.48498 * 109.47155 * 89.99934 * 3 2 1 5 5 H 1.48504 * 109.47292 * 209.99953 * 3 2 1 6 6 H 1.48498 * 109.47289 * 330.00143 * 3 2 1 7 7 C 1.40033 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99790 * 328.72270 * 7 2 1 9 9 C 1.41417 * 120.00169 * 148.72800 * 7 2 1 10 10 C 1.41205 * 121.02069 * 146.07741 * 9 7 2 11 11 C 1.36450 * 119.13857 * 179.70036 * 10 9 7 12 12 C 1.50696 * 119.34255 * 180.29699 * 11 10 9 13 13 F 1.39903 * 109.47345 * 210.28727 * 12 11 10 14 14 F 1.39897 * 109.47171 * 330.28573 * 12 11 10 15 15 N 1.32173 * 121.32007 * 0.59109 * 11 10 9 16 16 C 1.32265 * 122.28735 * 359.70246 * 15 11 10 17 17 O 1.35745 * 119.66214 * 180.02562 * 16 15 11 18 18 C 1.38895 * 120.67847 * 359.97438 * 16 15 11 19 19 F 1.35101 * 120.69210 * 180.02562 * 18 16 15 20 20 H 0.97000 * 120.00202 * 174.86984 * 1 2 3 21 21 H 1.08008 * 120.42857 * 359.97438 * 10 9 7 22 22 H 1.09003 * 109.47430 * 90.28765 * 12 11 10 23 23 H 0.96699 * 114.00153 * 269.98076 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4892 2.0463 1.4001 5 1 3.5392 1.4401 -0.7000 6 1 1.4392 2.6526 -0.7000 7 6 2.0077 -1.2127 -0.0005 8 1 1.5853 -2.0804 0.4847 9 6 3.2678 -1.3015 -0.6363 10 6 4.2829 -2.1400 -0.1260 11 6 5.4824 -2.2009 -0.7736 12 6 6.5666 -3.0993 -0.2368 13 9 7.8181 -2.5545 -0.5435 14 9 6.4344 -3.2116 1.1514 15 7 5.7143 -1.4834 -1.8591 16 6 4.8051 -0.6763 -2.3802 17 8 5.1004 0.0359 -3.4975 18 6 3.5510 -0.5509 -1.7966 19 9 2.6220 0.2730 -2.3289 20 1 -0.4850 -0.8367 -0.0751 21 1 4.1106 -2.7288 0.7629 22 1 6.4788 -4.0863 -0.6912 23 1 5.4860 0.9046 -3.3196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238687118.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:16 Heat of formation + Delta-G solvation = -163.277021 kcal Electronic energy + Delta-G solvation = -16321.697454 eV Core-core repulsion = 12913.233390 eV Total energy + Delta-G solvation = -3408.464064 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.55041 -47.86092 -46.55724 -39.10312 -36.48227 -34.34490 -31.50861 -30.13310 -26.10171 -25.55358 -22.01813 -21.15399 -19.05881 -17.64792 -17.20584 -17.07847 -16.36234 -16.29600 -15.66390 -15.43004 -14.22496 -13.70954 -13.43746 -13.37705 -13.05749 -12.86437 -12.76653 -12.43258 -11.97423 -11.68427 -11.11741 -10.99194 -10.74100 -10.36678 -9.94242 -9.48262 -8.66690 -8.44014 -7.96087 -7.71305 -5.06557 1.78810 2.15554 3.12159 3.15749 3.32018 3.80276 3.89076 4.12761 4.40078 4.66831 4.74017 5.18244 5.33393 5.45435 5.94613 6.17471 6.49701 6.61433 7.00566 7.12274 7.19382 7.73106 7.91901 8.17100 8.27082 8.76315 9.55967 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.010775 C = 0.008960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.030076 B = 2597.946491 C = 3124.423386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.054 3.946 3 Si 1.077 2.923 4 H -0.289 1.289 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.497 4.497 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.214 4.214 11 C 0.070 3.930 12 C 0.331 3.669 13 F -0.196 7.196 14 F -0.200 7.200 15 N -0.554 5.554 16 C 0.307 3.693 17 O -0.484 6.484 18 C -0.074 4.074 19 F -0.135 7.135 20 H 0.295 0.705 21 H 0.127 0.873 22 H 0.118 0.882 23 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 -1.400 0.312 6.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.173 4.173 3 Si 0.902 3.098 4 H -0.216 1.216 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.113 0.887 9 C 0.078 3.922 10 C -0.237 4.237 11 C -0.062 4.062 12 C 0.276 3.724 13 F -0.177 7.177 14 F -0.182 7.182 15 N -0.278 5.278 16 C 0.129 3.871 17 O -0.290 6.290 18 C -0.099 4.099 19 F -0.114 7.114 20 H 0.106 0.894 21 H 0.145 0.855 22 H 0.135 0.865 23 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 6.219 -0.313 -0.352 6.236 hybrid contribution -0.712 -1.157 0.496 1.447 sum 5.506 -1.471 0.145 5.701 Atomic orbital electron populations 1.70507 1.08669 1.33564 1.25844 1.27546 0.95368 1.04900 0.89480 0.83496 0.76875 0.72704 0.76739 1.21646 1.19348 1.19656 1.20611 1.00620 0.99710 1.31615 0.88688 1.17802 0.93557 0.90742 0.90137 1.21368 0.92541 1.07414 1.02414 1.20316 0.94121 0.98233 0.93534 1.20061 0.78930 0.97036 0.76376 1.92972 1.43682 1.88318 1.92722 1.92970 1.95817 1.97080 1.32294 1.66410 1.34843 1.12692 1.13817 1.18596 0.87985 0.93466 0.87003 1.84749 1.84086 1.32672 1.27462 1.18681 0.89187 1.04613 0.97436 1.91083 1.64824 1.69979 1.85493 0.89365 0.85494 0.86479 0.75564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.18 13.65 55.55 0.76 -18.42 14 2 C 0.05 1.33 4.74 -17.34 -0.08 1.25 14 3 Si 1.08 23.71 25.86 -169.99 -4.40 19.31 14 4 H -0.29 -6.02 7.11 56.52 0.40 -5.62 14 5 H -0.27 -5.93 5.33 56.52 0.30 -5.63 14 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 14 7 C -0.50 -12.41 9.31 -37.70 -0.35 -12.76 14 8 H 0.10 2.36 8.06 -52.48 -0.42 1.94 14 9 C 0.09 2.09 4.91 -106.49 -0.52 1.57 14 10 C -0.21 -4.69 9.15 -39.10 -0.36 -5.05 14 11 C 0.07 1.48 6.54 -83.09 -0.54 0.93 14 12 C 0.33 5.63 5.71 36.00 0.21 5.83 14 13 F -0.20 -3.57 17.05 2.25 0.04 -3.53 14 14 F -0.20 -3.40 16.40 2.25 0.04 -3.37 14 15 N -0.55 -12.57 9.94 -9.87 -0.10 -12.66 14 16 C 0.31 7.08 7.75 -17.12 -0.13 6.95 14 17 O -0.48 -9.80 13.44 -18.94 -0.25 -10.05 14 18 C -0.07 -1.81 5.18 -38.27 -0.20 -2.00 14 19 F -0.13 -3.32 12.77 2.25 0.03 -3.29 14 20 H 0.29 7.06 8.73 -40.82 -0.36 6.71 14 21 H 0.13 2.54 7.54 -52.48 -0.40 2.15 14 22 H 0.12 1.55 8.14 -51.93 -0.42 1.13 14 23 H 0.39 5.85 9.06 45.56 0.41 6.26 14 LS Contribution 223.48 15.07 3.37 3.37 Total: -1.00 -27.84 223.48 -2.58 -30.42 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -0.08 Total: 1.50 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.98 Total: -3.29 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.66 Total: -31.08 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.25 Total: -10.05 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 0.10 Total: -10.19 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.40 Total: 19.31 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -27.84 -2.58 -30.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238687118.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.853 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds