Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48507 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46801 * 299.99230 * 3 2 1 6 6 H 1.48492 * 109.47193 * 59.99509 * 3 2 1 7 7 C 1.39929 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00419 * 159.47176 * 7 2 1 9 9 C 1.41088 * 120.00082 * 339.46937 * 7 2 1 10 10 C 1.41430 * 120.71793 * 144.71408 * 9 7 2 11 11 O 1.35413 * 119.86904 * 359.97438 * 10 9 7 12 12 N 1.32011 * 120.26693 * 180.02562 * 10 9 7 13 13 C 1.32125 * 121.96990 * 359.97438 * 12 10 9 14 14 C 1.50704 * 119.26765 * 179.72235 * 13 12 10 15 15 F 1.39896 * 109.47395 * 30.00229 * 14 13 12 16 16 F 1.39905 * 109.47069 * 149.99966 * 14 13 12 17 17 C 1.38387 * 121.45714 * 359.97438 * 13 12 10 18 18 C 1.38424 * 119.54657 * 0.02579 * 17 13 12 19 19 F 1.35098 * 120.90348 * 180.02562 * 18 17 13 20 20 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 21 21 H 0.96703 * 113.99922 * 267.80609 * 11 10 9 22 22 H 1.08994 * 109.47247 * 269.99484 * 14 13 12 23 23 H 1.08005 * 120.22595 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0086 -1.2118 0.0005 8 1 3.0371 -1.2417 -0.3274 9 6 1.3704 -2.3947 0.4296 10 6 1.6625 -3.6359 -0.1822 11 8 2.5634 -3.6948 -1.1915 12 7 1.0598 -4.7371 0.2260 13 6 0.1740 -4.7275 1.2063 14 6 -0.4821 -6.0199 1.6191 15 9 0.3965 -7.0837 1.3878 16 9 -0.8018 -5.9667 2.9801 17 6 -0.1684 -3.5562 1.8588 18 6 0.4265 -2.3650 1.4803 19 9 0.1131 -1.2056 2.0989 20 1 -0.4850 0.8401 -0.0004 21 1 2.1735 -3.6090 -2.0723 22 1 -1.3922 -6.1673 1.0377 23 1 -0.8954 -3.5712 2.6574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238687814.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = -162.772859 kcal Electronic energy + Delta-G solvation = -16204.216279 eV Core-core repulsion = 12795.774078 eV Total energy + Delta-G solvation = -3408.442202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.35039 -47.36763 -46.36645 -38.83628 -35.80569 -34.27390 -30.91215 -29.96797 -27.34230 -24.26499 -21.94383 -21.30733 -17.93889 -17.73891 -16.99114 -16.86510 -16.06921 -15.77097 -15.33044 -14.58177 -14.26389 -14.05042 -13.62952 -13.21250 -12.95773 -12.70574 -12.40740 -12.03279 -11.72551 -11.58161 -11.47216 -10.84801 -10.62623 -10.55378 -10.06721 -9.61626 -8.47184 -8.15909 -7.88948 -7.22557 -4.82253 2.03936 2.38907 2.88959 2.93770 2.98770 3.68855 4.14938 4.25677 4.64271 4.83644 5.14169 5.38288 5.57615 5.81440 5.98038 6.38676 6.69061 6.74294 6.86438 7.07435 7.49372 7.95115 8.13552 8.29335 8.72464 9.07025 9.74327 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.008708 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.575382 B = 3214.777232 C = 3742.479712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.070 3.930 3 Si 0.920 3.080 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.422 4.422 8 H 0.101 0.899 9 C 0.041 3.959 10 C 0.210 3.790 11 O -0.472 6.472 12 N -0.458 5.458 13 C -0.061 4.061 14 C 0.345 3.655 15 F -0.200 7.200 16 F -0.209 7.209 17 C -0.148 4.148 18 C 0.064 3.936 19 F -0.129 7.129 20 H 0.292 0.708 21 H 0.374 0.626 22 H 0.110 0.890 23 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -1.408 0.006 2.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.154 4.154 3 Si 0.743 3.257 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.449 4.449 8 H 0.119 0.881 9 C 0.034 3.966 10 C 0.024 3.976 11 O -0.275 6.275 12 N -0.176 5.176 13 C -0.198 4.198 14 C 0.290 3.710 15 F -0.182 7.182 16 F -0.190 7.190 17 C -0.169 4.169 18 C 0.038 3.962 19 F -0.108 7.108 20 H 0.103 0.897 21 H 0.228 0.772 22 H 0.127 0.873 23 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.629 -2.063 0.088 2.630 hybrid contribution -0.342 1.753 0.171 1.794 sum -1.971 -0.310 0.260 2.012 Atomic orbital electron populations 1.69762 1.08093 1.30988 1.29078 1.26064 0.94846 1.02168 0.92292 0.86034 0.81080 0.79639 0.78945 1.17830 1.19547 1.19207 1.19579 0.99696 0.90399 1.35233 0.88144 1.18545 0.92107 0.94061 0.91921 1.18635 0.97303 0.87268 0.94375 1.84710 1.31933 1.94979 1.15907 1.65999 1.05831 1.32443 1.13336 1.19822 1.04595 0.92905 1.02438 1.19817 0.90935 0.82613 0.77590 1.92951 1.72344 1.58582 1.94278 1.92936 1.93403 1.96689 1.35994 1.21169 1.02015 0.92078 1.01688 1.17648 1.02761 0.80699 0.95126 1.91375 1.91734 1.47129 1.80552 0.89728 0.77199 0.87292 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.38 11.09 55.55 0.62 -17.76 14 2 C 0.07 1.64 4.55 -17.32 -0.08 1.56 14 3 Si 0.92 17.56 29.61 -169.99 -5.03 12.53 14 4 H -0.26 -4.83 7.11 56.52 0.40 -4.42 14 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 14 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 14 7 C -0.42 -10.47 8.54 -37.87 -0.32 -10.80 14 8 H 0.10 2.42 7.88 -52.49 -0.41 2.01 14 9 C 0.04 1.05 5.43 -106.45 -0.58 0.47 14 10 C 0.21 5.16 7.80 -16.26 -0.13 5.03 14 11 O -0.47 -10.40 12.99 -17.93 -0.23 -10.63 14 12 N -0.46 -11.03 9.94 -8.90 -0.09 -11.11 14 13 C -0.06 -1.35 6.59 -82.41 -0.54 -1.90 14 14 C 0.34 6.32 5.71 36.01 0.21 6.53 14 15 F -0.20 -3.95 17.04 2.25 0.04 -3.91 14 16 F -0.21 -3.77 16.43 2.25 0.04 -3.73 14 17 C -0.15 -3.34 9.39 -39.46 -0.37 -3.71 14 18 C 0.06 1.60 6.76 -38.36 -0.26 1.34 14 19 F -0.13 -3.29 14.36 2.25 0.03 -3.25 14 20 H 0.29 6.39 8.30 -40.82 -0.34 6.05 14 21 H 0.37 6.49 9.06 45.56 0.41 6.90 14 22 H 0.11 1.60 8.14 -51.93 -0.42 1.17 14 23 H 0.12 2.46 7.57 -52.48 -0.40 2.07 14 LS Contribution 228.49 15.07 3.44 3.44 Total: -1.00 -28.20 228.49 -3.22 -31.41 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 0.05 Total: 4.50 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.07 Total: -1.48 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 0.53 Total: -28.87 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.23 Total: -10.63 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 0.11 Total: -10.90 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.20 -3.22 -31.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238687814.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.359 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds