Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48507 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46801 * 299.99230 * 3 2 1 6 6 H 1.48492 * 109.47193 * 59.99509 * 3 2 1 7 7 C 1.39929 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00419 * 159.47176 * 7 2 1 9 9 C 1.41088 * 120.00082 * 339.46937 * 7 2 1 10 10 C 1.41430 * 120.71793 * 144.71408 * 9 7 2 11 11 O 1.35413 * 119.86904 * 359.97438 * 10 9 7 12 12 N 1.32011 * 120.26693 * 180.02562 * 10 9 7 13 13 C 1.32125 * 121.96990 * 359.97438 * 12 10 9 14 14 C 1.50704 * 119.26765 * 179.72235 * 13 12 10 15 15 F 1.39896 * 109.47395 * 30.00229 * 14 13 12 16 16 F 1.39905 * 109.47069 * 149.99966 * 14 13 12 17 17 C 1.38387 * 121.45714 * 359.97438 * 13 12 10 18 18 C 1.38424 * 119.54657 * 0.02579 * 17 13 12 19 19 F 1.35098 * 120.90348 * 180.02562 * 18 17 13 20 20 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 21 21 H 0.96703 * 113.99922 * 267.80609 * 11 10 9 22 22 H 1.08994 * 109.47247 * 269.99484 * 14 13 12 23 23 H 1.08005 * 120.22595 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0086 -1.2118 0.0005 8 1 3.0371 -1.2417 -0.3274 9 6 1.3704 -2.3947 0.4296 10 6 1.6625 -3.6359 -0.1822 11 8 2.5634 -3.6948 -1.1915 12 7 1.0598 -4.7371 0.2260 13 6 0.1740 -4.7275 1.2063 14 6 -0.4821 -6.0199 1.6191 15 9 0.3965 -7.0837 1.3878 16 9 -0.8018 -5.9667 2.9801 17 6 -0.1684 -3.5562 1.8588 18 6 0.4265 -2.3650 1.4803 19 9 0.1131 -1.2056 2.0989 20 1 -0.4850 0.8401 -0.0004 21 1 2.1735 -3.6090 -2.0723 22 1 -1.3922 -6.1673 1.0377 23 1 -0.8954 -3.5712 2.6574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238687814.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = -183.425891 kcal Electronic energy + Delta-G solvation = -16205.111862 eV Core-core repulsion = 12795.774078 eV Total energy + Delta-G solvation = -3409.337784 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.82367 -49.28997 -47.84716 -40.64731 -37.57170 -36.05762 -32.73207 -31.75452 -29.04775 -25.97411 -23.78102 -23.04999 -19.73964 -19.50813 -18.67329 -18.31270 -17.69388 -17.46026 -17.08727 -16.35534 -16.10634 -15.76778 -15.46158 -14.69780 -14.67968 -14.20588 -14.02580 -13.75965 -13.51577 -13.30476 -13.03374 -12.43400 -12.33792 -12.12782 -11.80839 -11.33087 -10.29362 -10.01295 -9.72043 -8.97270 -6.68210 0.24712 0.52460 1.34881 1.40916 1.52216 2.10872 2.40460 2.66974 2.99149 3.25665 3.43986 3.64091 4.14642 4.17154 4.24084 4.62260 4.88429 4.96048 5.07235 5.29870 5.66575 6.10421 6.32248 6.48751 7.02303 7.24346 8.02705 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.008708 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.575382 B = 3214.777232 C = 3742.479712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.035 3.965 3 Si 0.988 3.012 4 H -0.254 1.254 5 H -0.256 1.256 6 H -0.266 1.266 7 C -0.448 4.448 8 H 0.097 0.903 9 C 0.015 3.985 10 C 0.199 3.801 11 O -0.477 6.477 12 N -0.471 5.471 13 C -0.063 4.063 14 C 0.349 3.651 15 F -0.208 7.208 16 F -0.206 7.206 17 C -0.145 4.145 18 C 0.036 3.964 19 F -0.137 7.137 20 H 0.300 0.700 21 H 0.394 0.606 22 H 0.158 0.842 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.396 -1.383 0.022 2.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.185 4.185 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.180 1.180 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.115 0.885 9 C 0.007 3.993 10 C 0.014 3.986 11 O -0.283 6.283 12 N -0.189 5.189 13 C -0.200 4.200 14 C 0.295 3.705 15 F -0.189 7.189 16 F -0.187 7.187 17 C -0.166 4.166 18 C 0.010 3.990 19 F -0.116 7.116 20 H 0.111 0.889 21 H 0.250 0.750 22 H 0.175 0.825 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.000 -2.058 0.085 2.871 hybrid contribution -0.259 1.644 0.163 1.672 sum -2.258 -0.414 0.248 2.309 Atomic orbital electron populations 1.69777 1.09372 1.32314 1.29544 1.26868 0.95482 1.04953 0.91246 0.85038 0.79571 0.75333 0.79324 1.17737 1.18034 1.19065 1.19741 0.99794 0.91318 1.36684 0.88465 1.18863 0.92939 0.94884 0.92566 1.18832 0.97485 0.87344 0.94969 1.84632 1.31980 1.94906 1.16745 1.66128 1.06473 1.32195 1.14155 1.20589 1.03542 0.94706 1.01206 1.20104 0.91847 0.80369 0.78175 1.92939 1.73000 1.58646 1.94350 1.92945 1.93254 1.96544 1.35962 1.21429 1.01921 0.91371 1.01917 1.17975 1.03923 0.81292 0.95799 1.91337 1.91879 1.47701 1.80689 0.88886 0.74958 0.82485 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.22 11.09 21.83 0.24 -37.98 14 2 C 0.04 1.64 4.55 85.24 0.39 2.03 14 3 Si 0.99 35.47 29.61 68.60 2.03 37.51 14 4 H -0.25 -8.98 7.11 99.48 0.71 -8.27 14 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 14 6 H -0.27 -9.43 7.11 99.48 0.71 -8.72 14 7 C -0.45 -22.50 8.54 23.38 0.20 -22.30 14 8 H 0.10 4.77 7.88 -2.91 -0.02 4.75 14 9 C 0.01 0.75 5.43 -21.05 -0.11 0.64 14 10 C 0.20 9.77 7.80 85.45 0.67 10.44 14 11 O -0.48 -20.94 12.99 -87.08 -1.13 -22.07 14 12 N -0.47 -22.24 9.94 -295.22 -2.94 -25.17 14 13 C -0.06 -2.72 6.59 42.55 0.28 -2.44 14 14 C 0.35 11.76 5.71 71.24 0.41 12.17 14 15 F -0.21 -7.70 17.04 44.97 0.77 -6.94 14 16 F -0.21 -6.82 16.43 44.97 0.74 -6.08 14 17 C -0.15 -6.40 9.39 22.35 0.21 -6.19 14 18 C 0.04 1.83 6.76 23.06 0.16 1.99 14 19 F -0.14 -7.03 14.36 44.97 0.65 -6.38 14 20 H 0.30 13.05 8.30 -92.71 -0.77 12.29 14 21 H 0.39 13.53 9.06 -74.06 -0.67 12.86 14 22 H 0.16 3.92 8.14 -2.39 -0.02 3.90 14 23 H 0.15 5.61 7.57 -2.91 -0.02 5.59 14 Total: -1.00 -59.40 228.49 3.17 -56.24 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.62 Total: 14.54 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 2.19 Total: -3.66 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -2.69 Total: -63.15 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -1.13 Total: -22.07 kcal Atomic # 9 Polarization: -21.55 SS G_CDS: 2.15 Total: -19.40 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.51 kcal Total: -59.40 3.17 -56.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238687814.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.190 kcal (2) G-P(sol) polarization free energy of solvation -59.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds