Wall clock time and date at job start Mon Mar 30 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48505 * 109.47275 * 264.95720 * 3 2 1 5 5 H 1.48501 * 109.47259 * 24.95888 * 3 2 1 6 6 H 1.48502 * 109.47395 * 144.95894 * 3 2 1 7 7 C 1.40008 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00041 * 172.72557 * 7 2 1 9 9 C 1.41211 * 120.00203 * 352.72717 * 7 2 1 10 10 N 1.33763 * 119.76343 * 348.45802 * 9 7 2 11 11 C 1.31725 * 121.46670 * 179.97438 * 10 9 7 12 12 O 1.35651 * 119.58563 * 180.27175 * 11 10 9 13 13 C 1.39905 * 120.82456 * 359.97438 * 11 10 9 14 14 F 1.35103 * 120.27149 * 179.97438 * 13 11 10 15 15 C 1.38935 * 119.45116 * 0.02562 * 13 11 10 16 16 C 1.38225 * 118.64104 * 359.97438 * 15 13 11 17 17 C 1.50689 * 120.42853 * 179.97438 * 16 15 13 18 18 F 1.39897 * 109.47212 * 19.09888 * 17 16 15 19 19 F 1.39897 * 109.47376 * 139.10327 * 17 16 15 20 20 H 0.97000 * 120.00081 * 0.02562 * 1 2 3 21 21 H 0.96701 * 113.99824 * 269.72338 * 12 11 10 22 22 H 1.08001 * 120.67850 * 179.97438 * 15 13 11 23 23 H 1.09005 * 109.47122 * 259.10632 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.5957 1.9849 -1.3947 5 1 1.3899 2.6811 0.5908 6 1 3.4819 1.4733 0.8039 7 6 2.0077 -1.2125 0.0005 8 1 3.0812 -1.2163 -0.1179 9 6 1.3102 -2.4305 0.1559 10 7 0.0264 -2.4173 0.5312 11 6 -0.6564 -3.5331 0.6857 12 8 -1.9583 -3.4751 1.0623 13 6 -0.0572 -4.7772 0.4604 14 9 -0.7678 -5.9147 0.6228 15 6 1.2748 -4.8331 0.0694 16 6 1.9699 -3.6485 -0.0861 17 6 3.4164 -3.6622 -0.5082 18 9 3.7192 -4.8954 -1.0954 19 9 3.6420 -2.6373 -1.4333 20 1 -0.4850 0.8400 -0.0004 21 1 -2.0920 -3.4942 2.0198 22 1 1.7572 -5.7827 -0.1095 23 1 4.0512 -3.5100 0.3648 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238691342.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:45 Heat of formation + Delta-G solvation = -180.021629 kcal Electronic energy + Delta-G solvation = -16301.898710 eV Core-core repulsion = 12892.708546 eV Total energy + Delta-G solvation = -3409.190165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.73569 -49.35904 -47.75378 -40.51720 -37.99909 -35.53570 -33.01112 -31.72788 -28.21385 -26.30209 -23.93058 -22.79640 -20.07697 -19.31994 -18.47862 -18.25735 -18.08950 -17.21206 -16.91296 -16.63637 -16.05579 -15.72935 -15.00239 -14.59143 -14.37932 -14.27078 -13.92400 -13.76365 -13.37865 -12.97156 -12.82679 -12.59627 -12.28585 -12.03748 -11.77676 -11.21138 -10.42994 -9.89578 -9.54288 -8.60704 -6.71703 0.31939 0.65460 1.42375 1.50071 1.57709 2.17516 2.51545 2.89949 3.11946 3.45807 3.58691 3.71756 4.09686 4.24510 4.31382 4.57241 4.81933 5.00781 5.12622 5.37831 5.76318 6.04128 6.34221 6.57641 6.88069 7.69779 8.21257 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.012581 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.182236 B = 2224.984313 C = 3416.465944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.022 3.978 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.244 1.244 7 C -0.421 4.421 8 H 0.120 0.880 9 C 0.251 3.749 10 N -0.512 5.512 11 C 0.319 3.681 12 O -0.495 6.495 13 C -0.150 4.150 14 F -0.157 7.157 15 C -0.027 4.027 16 C -0.337 4.337 17 C 0.343 3.657 18 F -0.214 7.214 19 F -0.207 7.207 20 H 0.289 0.711 21 H 0.408 0.592 22 H 0.148 0.852 23 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 -0.828 2.555 6.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.202 4.202 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.167 1.167 7 C -0.449 4.449 8 H 0.138 0.862 9 C 0.129 3.871 10 N -0.234 5.234 11 C 0.128 3.872 12 O -0.303 6.303 13 C -0.175 4.175 14 F -0.137 7.137 15 C -0.051 4.051 16 C -0.342 4.342 17 C 0.289 3.711 18 F -0.196 7.196 19 F -0.188 7.188 20 H 0.100 0.900 21 H 0.267 0.733 22 H 0.166 0.834 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.698 0.089 2.069 5.135 hybrid contribution -0.008 -0.555 0.175 0.582 sum 4.691 -0.466 2.244 5.221 Atomic orbital electron populations 1.70112 1.09491 1.30697 1.26068 1.27203 0.95619 1.05377 0.92032 0.85060 0.79199 0.74698 0.80008 1.18565 1.19309 1.16725 1.20508 0.96963 0.89624 1.37807 0.86232 1.18345 0.86841 0.92692 0.89217 1.68220 1.08674 1.26430 1.20110 1.19790 0.84930 0.87643 0.94851 1.84659 1.19708 1.96062 1.29908 1.18372 0.92318 0.81572 1.25286 1.91294 1.78444 1.48663 1.95253 1.20855 0.91407 0.98882 0.93948 1.21037 0.98475 0.94303 1.20416 1.20002 0.93589 0.70227 0.87290 1.92891 1.94286 1.45380 1.87013 1.92924 1.95603 1.60040 1.70213 0.89988 0.73279 0.83442 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.78 11.63 21.83 0.25 -37.53 14 2 C 0.02 1.04 5.46 85.28 0.47 1.51 14 3 Si 0.99 34.36 29.57 68.60 2.03 36.39 14 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 14 5 H -0.27 -9.00 7.11 99.48 0.71 -8.29 14 6 H -0.24 -7.89 7.11 99.48 0.71 -7.18 14 7 C -0.42 -20.30 8.00 23.43 0.19 -20.12 14 8 H 0.12 5.20 5.73 -2.91 -0.02 5.18 14 9 C 0.25 12.81 6.47 40.16 0.26 13.07 14 10 N -0.51 -27.51 8.07 -302.22 -2.44 -29.95 14 11 C 0.32 15.82 7.76 85.11 0.66 16.48 14 12 O -0.49 -21.80 13.43 -89.66 -1.20 -23.00 14 13 C -0.15 -6.98 7.38 22.84 0.17 -6.81 14 14 F -0.16 -6.95 17.13 44.97 0.77 -6.18 14 15 C -0.03 -1.15 9.49 22.43 0.21 -0.94 14 16 C -0.34 -15.01 5.78 -19.29 -0.11 -15.12 14 17 C 0.34 12.56 5.12 71.23 0.36 12.93 14 18 F -0.21 -7.59 16.27 44.97 0.73 -6.86 14 19 F -0.21 -8.30 14.56 44.97 0.65 -7.64 14 20 H 0.29 13.24 8.29 -92.71 -0.77 12.47 14 21 H 0.41 13.27 9.06 -74.06 -0.67 12.60 14 22 H 0.15 5.50 7.43 -2.91 -0.02 5.48 14 23 H 0.14 4.12 8.14 -2.38 -0.02 4.10 14 Total: -1.00 -61.24 226.09 3.63 -57.61 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.62 Total: 16.18 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 2.21 Total: 0.99 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -2.18 Total: -67.48 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -1.20 Total: -23.00 kcal Atomic # 9 Polarization: -22.84 SS G_CDS: 2.16 Total: -20.68 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.39 kcal Total: -61.24 3.63 -57.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238691342.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.409 kcal (2) G-P(sol) polarization free energy of solvation -61.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds