Wall clock time and date at job start Mon Mar 30 2020 03:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48507 * 109.46846 * 239.99862 * 3 2 1 5 5 H 1.48492 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46979 * 120.00263 * 3 2 1 7 7 C 1.40046 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.41155 * 119.99930 * 359.97438 * 7 2 1 10 10 N 1.33771 * 119.82206 * 0.29131 * 9 7 2 11 11 C 1.31754 * 121.46053 * 180.25934 * 10 9 7 12 12 O 1.35646 * 119.52020 * 179.71448 * 11 10 9 13 13 C 1.39620 * 120.96020 * 359.44947 * 11 10 9 14 14 C 1.50697 * 120.22879 * 180.24829 * 13 11 10 15 15 F 1.39902 * 109.46858 * 119.99356 * 14 13 11 16 16 F 1.39896 * 109.47325 * 239.99869 * 14 13 11 17 17 C 1.38554 * 119.54858 * 0.26484 * 13 11 10 18 18 C 1.38680 * 118.63478 * 0.02562 * 17 13 11 19 19 F 1.35107 * 120.47828 * 179.97438 * 18 17 13 20 20 H 0.96999 * 119.99735 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00407 * 269.73535 * 12 11 10 22 22 H 1.09001 * 109.46825 * 0.02562 * 14 13 11 23 23 H 1.08001 * 120.68097 * 179.97438 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6964 -1.2126 5 1 1.2766 2.7464 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0078 -1.2128 -0.0005 8 1 3.0878 -1.2128 -0.0001 9 6 1.3020 -2.4353 -0.0005 10 7 -0.0357 -2.4311 -0.0059 11 6 -0.7269 -3.5528 -0.0010 12 8 -2.0824 -3.5026 -0.0009 13 6 -0.0844 -4.7924 -0.0015 14 6 -0.8912 -6.0651 -0.0014 15 9 -0.5844 -6.8118 -1.1441 16 9 -0.5836 -6.8123 1.1405 17 6 1.3002 -4.8443 -0.0016 18 6 2.0100 -3.6529 -0.0007 19 9 3.3610 -3.6602 -0.0003 20 1 -0.4850 0.8401 -0.0004 21 1 -2.4755 -3.4884 0.8825 22 1 -1.9537 -5.8217 -0.0015 23 1 1.8160 -5.7932 -0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238691445.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:39 Heat of formation + Delta-G solvation = -184.032601 kcal Electronic energy + Delta-G solvation = -16117.328870 eV Core-core repulsion = 12707.964777 eV Total energy + Delta-G solvation = -3409.364093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.78394 -49.34903 -47.78616 -40.62769 -37.78994 -35.70976 -33.23740 -31.14412 -29.11079 -25.79177 -24.05303 -22.83750 -20.10808 -19.23182 -18.59119 -18.39245 -18.03717 -17.27615 -16.83370 -16.47356 -16.11401 -15.97104 -14.91398 -14.75479 -14.50243 -14.21018 -13.94073 -13.62826 -13.53523 -13.06819 -12.80987 -12.72094 -12.39549 -12.00320 -11.90759 -11.38350 -10.44243 -9.91275 -9.57917 -8.57956 -6.85199 0.33352 0.62703 1.38553 1.48175 1.52722 2.14030 2.46978 2.99969 3.02797 3.41685 3.46081 3.66027 4.00972 4.17816 4.31716 4.55514 4.92956 4.97347 5.11221 5.20167 5.66863 5.92713 6.32180 6.49163 6.91002 7.68415 8.14487 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.038602 B = 0.008514 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.184721 B = 3287.819440 C = 3835.959222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.020 3.980 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.254 1.254 7 C -0.419 4.419 8 H 0.100 0.900 9 C 0.224 3.776 10 N -0.515 5.515 11 C 0.361 3.639 12 O -0.490 6.490 13 C -0.374 4.374 14 C 0.340 3.660 15 F -0.219 7.219 16 F -0.215 7.215 17 C -0.035 4.035 18 C -0.112 4.112 19 F -0.156 7.156 20 H 0.292 0.708 21 H 0.413 0.587 22 H 0.146 0.854 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 -2.132 1.817 3.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.206 4.206 3 Si 0.815 3.185 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.448 4.448 8 H 0.118 0.882 9 C 0.101 3.899 10 N -0.238 5.238 11 C 0.171 3.829 12 O -0.300 6.300 13 C -0.382 4.382 14 C 0.286 3.714 15 F -0.200 7.200 16 F -0.197 7.197 17 C -0.059 4.059 18 C -0.135 4.135 19 F -0.135 7.135 20 H 0.103 0.897 21 H 0.273 0.727 22 H 0.163 0.837 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.825 -1.246 1.216 3.318 hybrid contribution 0.969 -0.444 0.425 1.148 sum -1.855 -1.691 1.641 2.999 Atomic orbital electron populations 1.70154 1.08996 1.30751 1.24247 1.27159 0.95937 1.04899 0.92577 0.85021 0.78686 0.74284 0.80490 1.18137 1.18335 1.17841 1.20219 0.95688 0.90167 1.38746 0.88189 1.18728 0.87767 0.92136 0.91296 1.68351 1.06605 1.27301 1.21519 1.19281 0.84579 0.87508 0.91555 1.84605 1.14164 1.95965 1.35225 1.20515 0.93961 0.94713 1.28977 1.20062 1.00275 0.80992 0.70022 1.92926 1.95408 1.79234 1.52446 1.92934 1.95415 1.79189 1.52144 1.20785 0.93517 0.96593 0.94956 1.18729 0.77110 0.95450 1.22215 1.91269 1.29302 1.97355 1.95566 0.89656 0.72728 0.83712 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -35.68 11.46 21.84 0.25 -35.43 14 2 C 0.02 0.95 5.50 85.29 0.47 1.41 14 3 Si 1.00 34.72 29.56 68.60 2.03 36.75 14 4 H -0.26 -8.79 7.11 99.48 0.71 -8.08 14 5 H -0.26 -8.39 7.11 99.48 0.71 -7.69 14 6 H -0.25 -8.57 7.11 99.48 0.71 -7.87 14 7 C -0.42 -21.69 8.99 23.43 0.21 -21.48 14 8 H 0.10 4.92 7.42 -2.91 -0.02 4.90 14 9 C 0.22 12.08 6.56 40.20 0.26 12.34 14 10 N -0.52 -27.19 7.88 -302.28 -2.38 -29.57 14 11 C 0.36 16.37 7.72 85.04 0.66 17.02 14 12 O -0.49 -18.06 12.33 -89.60 -1.10 -19.17 14 13 C -0.37 -15.87 5.42 -19.46 -0.11 -15.98 14 14 C 0.34 11.72 5.43 71.23 0.39 12.11 14 15 F -0.22 -7.98 17.26 44.97 0.78 -7.21 14 16 F -0.22 -7.45 17.26 44.97 0.78 -6.67 14 17 C -0.03 -1.56 9.72 22.45 0.22 -1.34 14 18 C -0.11 -5.63 7.34 23.02 0.17 -5.46 14 19 F -0.16 -7.60 16.56 44.97 0.74 -6.85 14 20 H 0.29 12.80 8.29 -92.71 -0.77 12.03 14 21 H 0.41 10.64 9.06 -74.06 -0.67 9.97 14 22 H 0.15 4.02 7.00 -2.39 -0.02 4.01 14 23 H 0.13 5.45 8.06 -2.91 -0.02 5.43 14 Total: -1.00 -60.80 230.12 3.97 -56.82 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.62 Total: 12.70 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 2.27 Total: -1.38 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -2.13 Total: -65.00 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -1.10 Total: -19.17 kcal Atomic # 9 Polarization: -23.03 SS G_CDS: 2.30 Total: -20.73 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal Total: -60.80 3.97 -56.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238691445.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.208 kcal (2) G-P(sol) polarization free energy of solvation -60.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds