Wall clock time and date at job start Mon Mar 30 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86798 * 120.00118 * 2 1 4 4 H 1.48499 * 109.46877 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46984 * 300.00065 * 3 2 1 6 6 H 1.48501 * 109.47130 * 60.00236 * 3 2 1 7 7 C 1.40010 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.41224 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.40655 * 119.76018 * 179.97438 * 9 7 2 11 11 C 1.38185 * 119.14225 * 179.97438 * 10 9 7 12 12 C 1.50694 * 120.67974 * 179.97438 * 11 10 9 13 13 F 1.39899 * 109.47153 * 300.02471 * 12 11 10 14 14 F 1.39904 * 109.47142 * 60.02083 * 12 11 10 15 15 C 1.38970 * 118.63843 * 0.02562 * 11 10 9 16 16 F 1.35103 * 120.27600 * 180.02562 * 15 11 10 17 17 C 1.39864 * 119.45411 * 0.02562 * 15 11 10 18 18 O 1.35649 * 119.58862 * 179.97438 * 17 15 11 19 19 N 1.31744 * 120.82823 * 359.96990 * 17 15 11 20 20 H 0.97002 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.42363 * 359.97438 * 10 9 7 22 22 H 1.08999 * 109.47076 * 180.02562 * 12 11 10 23 23 H 0.96703 * 114.00017 * 269.97649 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3463 -0.0006 5 1 1.8830 2.3964 -1.2125 6 1 1.8830 2.3964 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3015 -2.4355 -0.0016 10 6 2.0098 -3.6507 -0.0027 11 6 1.3059 -4.8399 -0.0032 12 6 2.0295 -6.1617 -0.0050 13 9 2.8314 -6.2528 -1.1477 14 9 2.8324 -6.2553 1.1369 15 6 -0.0830 -4.7918 -0.0032 16 9 -0.8041 -5.9342 -0.0032 17 6 -0.7282 -3.5508 -0.0032 18 8 -2.0837 -3.5007 -0.0037 19 7 -0.0359 -2.4299 -0.0026 20 1 -0.4850 0.8401 0.0004 21 1 3.0897 -3.6543 -0.0031 22 1 1.3025 -6.9739 -0.0056 23 1 -2.4765 -3.4856 -0.8873 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238691659.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:19 Heat of formation + Delta-G solvation = -180.116477 kcal Electronic energy + Delta-G solvation = -16100.023184 eV Core-core repulsion = 12690.828906 eV Total energy + Delta-G solvation = -3409.194278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.07265 -49.45109 -48.01782 -40.53182 -37.97009 -35.64002 -33.36859 -31.36640 -27.64827 -27.48440 -23.67952 -23.07649 -20.02727 -19.25066 -18.77794 -18.28092 -18.17622 -17.55448 -16.92270 -16.65000 -16.40369 -15.53498 -14.95270 -14.91200 -14.67067 -14.41400 -13.98552 -13.76192 -13.33644 -13.12848 -12.92343 -12.79396 -12.33054 -12.17733 -11.82915 -11.28906 -10.53942 -9.91473 -9.58830 -8.51714 -6.72908 0.36832 0.41485 1.42308 1.47171 1.59111 2.17133 2.48277 2.61551 2.98333 3.19116 3.44875 3.61292 3.76670 4.03269 4.27633 4.52053 4.88361 5.03392 5.08014 5.25077 5.64389 6.01177 6.33927 6.58157 6.88242 7.72289 8.23567 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.009263 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.703618 B = 3021.910429 C = 3820.581917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.018 3.982 3 Si 0.996 3.004 4 H -0.247 1.247 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.426 4.426 8 H 0.110 0.890 9 C 0.225 3.775 10 C -0.224 4.224 11 C -0.123 4.123 12 C 0.325 3.675 13 F -0.202 7.202 14 F -0.203 7.203 15 C -0.118 4.118 16 F -0.148 7.148 17 C 0.309 3.691 18 O -0.491 6.491 19 N -0.505 5.505 20 H 0.287 0.713 21 H 0.131 0.869 22 H 0.146 0.854 23 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 -3.393 -1.778 4.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.206 4.206 3 Si 0.815 3.185 4 H -0.170 1.170 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.247 4.247 11 C -0.130 4.130 12 C 0.272 3.728 13 F -0.183 7.183 14 F -0.184 7.184 15 C -0.143 4.143 16 F -0.128 7.128 17 C 0.120 3.880 18 O -0.300 6.300 19 N -0.228 5.228 20 H 0.098 0.902 21 H 0.149 0.851 22 H 0.163 0.837 23 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.621 -2.537 -1.180 3.233 hybrid contribution 0.284 -0.360 -0.436 0.633 sum 1.905 -2.897 -1.616 3.825 Atomic orbital electron populations 1.70212 1.09206 1.30213 1.26173 1.27180 0.95797 1.05139 0.92475 0.84927 0.79586 0.75017 0.78926 1.17015 1.18877 1.19166 1.20278 0.95795 0.89584 1.39955 0.87256 1.18762 0.86907 0.93519 0.90595 1.21713 1.00257 0.91353 1.11344 1.20357 0.92236 0.96128 1.04262 1.20259 0.84799 0.96863 0.70902 1.92971 1.76613 1.97273 1.51431 1.92972 1.76582 1.97257 1.51624 1.17968 0.88611 0.81967 1.25803 1.91295 1.77694 1.47852 1.95931 1.19672 0.85044 0.87350 0.95945 1.84647 1.14472 1.96000 1.34877 1.68328 1.08695 1.26097 1.19693 0.90164 0.85110 0.83701 0.73332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.19 11.45 21.84 0.25 -36.94 14 2 C 0.02 0.85 5.50 85.28 0.47 1.32 14 3 Si 1.00 34.44 29.56 68.60 2.03 36.47 14 4 H -0.25 -8.07 7.11 99.48 0.71 -7.37 14 5 H -0.26 -8.81 7.11 99.48 0.71 -8.11 14 6 H -0.27 -9.03 7.11 99.48 0.71 -8.32 14 7 C -0.43 -21.07 9.13 23.43 0.21 -20.85 14 8 H 0.11 4.88 7.85 -2.91 -0.02 4.86 14 9 C 0.23 11.75 6.55 40.18 0.26 12.01 14 10 C -0.22 -10.42 9.44 22.85 0.22 -10.20 14 11 C -0.12 -5.31 5.39 -19.70 -0.11 -5.42 14 12 C 0.33 11.40 5.47 71.23 0.39 11.79 14 13 F -0.20 -7.10 17.27 44.97 0.78 -6.33 14 14 F -0.20 -7.28 17.27 44.97 0.78 -6.50 14 15 C -0.12 -5.31 7.33 22.84 0.17 -5.14 14 16 F -0.15 -6.06 16.15 44.97 0.73 -5.33 14 17 C 0.31 15.10 7.76 85.10 0.66 15.76 14 18 O -0.49 -21.22 13.43 -89.64 -1.20 -22.42 14 19 N -0.51 -27.23 7.87 -302.22 -2.38 -29.61 14 20 H 0.29 12.96 8.29 -92.71 -0.77 12.19 14 21 H 0.13 5.61 8.06 -2.91 -0.02 5.58 14 22 H 0.15 4.22 7.22 -2.39 -0.02 4.21 14 23 H 0.41 13.16 9.06 -74.06 -0.67 12.49 14 Total: -1.00 -59.72 231.36 3.86 -55.86 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.62 Total: 15.53 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 2.27 Total: -0.72 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -2.13 Total: -66.55 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.20 Total: -22.42 kcal Atomic # 9 Polarization: -20.44 SS G_CDS: 2.28 Total: -18.16 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -59.72 3.86 -55.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238691659.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.256 kcal (2) G-P(sol) polarization free energy of solvation -59.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds