Wall clock time and date at job start Mon Mar 30 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 120.00031 * 2 1 4 4 H 1.48501 * 109.47489 * 270.00183 * 3 2 1 5 5 H 1.48504 * 109.47253 * 30.00454 * 3 2 1 6 6 H 1.48503 * 109.47186 * 150.00211 * 3 2 1 7 7 C 1.40015 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.41359 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.40511 * 119.78417 * 180.02562 * 9 7 2 11 11 C 1.38595 * 119.06956 * 180.27891 * 10 9 7 12 12 F 1.35098 * 120.69807 * 179.74433 * 11 10 9 13 13 C 1.38970 * 118.60489 * 359.52406 * 11 10 9 14 14 C 1.50702 * 120.26355 * 180.22612 * 13 11 10 15 15 F 1.39905 * 109.46988 * 300.23379 * 14 13 11 16 16 F 1.39907 * 109.46992 * 60.22867 * 14 13 11 17 17 C 1.39407 * 119.47772 * 0.45206 * 13 11 10 18 18 O 1.35629 * 119.54447 * 179.76672 * 17 13 11 19 19 N 1.31857 * 120.91103 * 359.79607 * 17 13 11 20 20 H 0.97001 * 120.00007 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.46129 * 359.97438 * 10 9 7 22 22 H 1.08991 * 109.47520 * 180.22869 * 14 13 11 23 23 H 0.96693 * 113.99986 * 270.02846 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0001 9 6 1.3007 -2.4368 -0.0005 10 6 2.0078 -3.6510 -0.0005 11 6 1.2999 -4.8425 -0.0064 12 9 1.9464 -6.0288 -0.0118 13 6 -0.0888 -4.7914 -0.0020 14 6 -0.8957 -6.0642 -0.0030 15 9 -0.5879 -6.8105 -1.1457 16 9 -0.5887 -6.8119 1.1389 17 6 -0.7297 -3.5534 -0.0014 18 8 -2.0850 -3.5019 -0.0019 19 7 -0.0365 -2.4317 -0.0010 20 1 -0.4850 0.8401 0.0004 21 1 3.0878 -3.6556 -0.0010 22 1 -1.9581 -5.8209 -0.0032 23 1 -2.4777 -3.4868 -0.8854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238691790.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:28 Heat of formation + Delta-G solvation = -163.382197 kcal Electronic energy + Delta-G solvation = -16215.405159 eV Core-core repulsion = 12806.936534 eV Total energy + Delta-G solvation = -3408.468625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.44135 -47.82069 -46.21481 -38.85651 -36.20753 -33.79775 -31.05870 -29.80273 -27.30903 -24.06468 -22.17747 -21.19770 -18.52013 -17.47501 -17.00335 -16.50748 -16.34080 -15.52750 -15.21941 -15.06892 -14.68842 -13.92728 -13.33840 -13.29089 -13.15116 -12.63810 -12.25366 -11.92970 -11.79420 -11.45135 -11.28978 -11.16940 -10.66549 -10.49522 -10.02021 -9.62549 -8.31936 -8.12392 -7.99107 -6.81922 -5.03021 2.13015 2.45444 2.90540 2.90561 2.94862 3.67022 4.20439 4.55650 4.62741 5.01787 5.29000 5.35506 5.45548 5.86150 6.28007 6.31262 6.56353 6.80670 6.91952 6.97566 7.50047 7.76619 8.05314 8.28269 8.53620 9.59024 9.87678 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.044403 B = 0.008098 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.440181 B = 3456.702554 C = 3910.094847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.059 3.941 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.392 4.392 8 H 0.097 0.903 9 C 0.283 3.717 10 C -0.315 4.315 11 C 0.199 3.801 12 F -0.146 7.146 13 C -0.427 4.427 14 C 0.335 3.665 15 F -0.216 7.216 16 F -0.214 7.214 17 C 0.389 3.611 18 O -0.492 6.492 19 N -0.500 5.500 20 H 0.282 0.718 21 H 0.120 0.880 22 H 0.111 0.889 23 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -1.538 -1.668 2.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.170 4.170 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.421 4.421 8 H 0.115 0.885 9 C 0.161 3.839 10 C -0.338 4.338 11 C 0.175 3.825 12 F -0.124 7.124 13 C -0.436 4.436 14 C 0.281 3.719 15 F -0.197 7.197 16 F -0.195 7.195 17 C 0.197 3.803 18 O -0.298 6.298 19 N -0.222 5.222 20 H 0.093 0.907 21 H 0.138 0.862 22 H 0.128 0.872 23 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.731 -0.661 -1.051 2.131 hybrid contribution 0.803 -0.450 -0.458 1.028 sum -0.928 -1.111 -1.510 2.091 Atomic orbital electron populations 1.70118 1.07456 1.29031 1.24154 1.26260 0.95155 1.01873 0.93693 0.86122 0.80456 0.79627 0.79658 1.18943 1.19671 1.18092 1.19907 0.95004 0.88981 1.38172 0.88522 1.18090 0.86577 0.91533 0.87674 1.21742 1.00031 0.91401 1.20623 1.17208 0.88987 0.80335 0.95944 1.91415 1.81783 1.45669 1.93579 1.20387 0.92994 0.94743 1.35490 1.19831 0.99151 0.82414 0.70480 1.92936 1.95296 1.79428 1.52080 1.92937 1.95255 1.79232 1.52090 1.18752 0.83484 0.86934 0.91090 1.84647 1.15999 1.96032 1.33155 1.68323 1.07851 1.25657 1.20401 0.90662 0.86203 0.87204 0.75375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.74 11.46 55.55 0.64 -16.10 14 2 C 0.06 1.36 5.50 -17.35 -0.10 1.26 14 3 Si 0.92 16.66 29.56 -169.99 -5.02 11.64 14 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 14 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 14 6 H -0.26 -4.59 7.11 56.52 0.40 -4.19 14 7 C -0.39 -9.51 9.14 -37.73 -0.34 -9.85 14 8 H 0.10 2.13 7.85 -52.49 -0.41 1.72 14 9 C 0.28 7.27 6.55 -85.00 -0.56 6.72 14 10 C -0.31 -7.56 9.83 -38.59 -0.38 -7.93 14 11 C 0.20 4.74 7.20 -39.18 -0.28 4.46 14 12 F -0.15 -3.35 16.65 2.25 0.04 -3.32 14 13 C -0.43 -9.76 5.43 -103.91 -0.56 -10.32 14 14 C 0.34 6.67 5.16 36.01 0.19 6.86 14 15 F -0.22 -4.36 17.12 2.25 0.04 -4.32 14 16 F -0.21 -4.50 17.15 2.25 0.04 -4.46 14 17 C 0.39 9.10 7.72 -17.11 -0.13 8.97 14 18 O -0.49 -9.66 12.33 -18.59 -0.23 -9.89 14 19 N -0.50 -13.01 7.88 -11.22 -0.09 -13.10 14 20 H 0.28 6.13 8.29 -40.82 -0.34 5.79 14 21 H 0.12 2.62 8.06 -52.49 -0.42 2.20 14 22 H 0.11 1.83 7.00 -51.93 -0.36 1.47 14 23 H 0.39 5.57 9.06 45.56 0.41 5.98 14 LS Contribution 230.24 15.07 3.47 3.47 Total: -1.00 -28.52 230.24 -3.21 -31.73 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 0.08 Total: 4.19 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.17 Total: 0.16 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.55 Total: -29.20 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.23 Total: -9.89 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 0.11 Total: -12.09 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.02 Total: 11.64 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.52 -3.21 -31.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238691790.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.654 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds