Wall clock time and date at job start Mon Mar 30 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86800 * 120.00355 * 2 1 4 4 H 1.48492 * 109.46938 * 270.84460 * 3 2 1 5 5 H 1.48500 * 109.47046 * 30.84552 * 3 2 1 6 6 H 1.48504 * 109.46884 * 150.84162 * 3 2 1 7 7 C 1.39918 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99947 * 341.36589 * 7 2 1 9 9 C 1.41086 * 119.99881 * 161.37243 * 7 2 1 10 10 C 1.41069 * 120.65958 * 331.88760 * 9 7 2 11 11 C 1.36863 * 118.40732 * 180.02562 * 10 9 7 12 12 C 1.50706 * 120.15901 * 179.97438 * 11 10 9 13 13 F 1.39901 * 109.46984 * 210.00127 * 12 11 10 14 14 F 1.39903 * 109.46645 * 329.99898 * 12 11 10 15 15 C 1.39022 * 119.68860 * 0.02562 * 11 10 9 16 16 F 1.35098 * 119.32808 * 180.02562 * 15 11 10 17 17 N 1.32248 * 121.35387 * 359.97438 * 15 11 10 18 18 C 1.32079 * 121.71979 * 0.02562 * 17 15 11 19 19 O 1.35385 * 119.92550 * 180.27381 * 18 17 15 20 20 H 0.97003 * 119.99392 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.79435 * 0.02562 * 10 9 7 22 22 H 1.08998 * 109.47231 * 89.99804 * 12 11 10 23 23 H 0.96703 * 114.00360 * 274.87704 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4726 2.0566 -1.3999 5 1 1.4496 2.6474 0.7179 6 1 3.5494 1.4349 0.6822 7 6 2.0084 -1.2118 0.0005 8 1 1.5108 -2.1224 0.2998 9 6 3.3638 -1.2440 -0.3897 10 6 3.8725 -0.2958 -1.3019 11 6 5.1943 -0.3701 -1.6490 12 6 5.7790 0.6225 -2.6207 13 9 6.8242 0.0208 -3.3297 14 9 4.7873 1.0386 -3.5155 15 6 5.9949 -1.3663 -1.1018 16 9 7.2988 -1.4326 -1.4491 17 7 5.5066 -2.2498 -0.2475 18 6 4.2396 -2.2286 0.1251 19 8 3.7794 -3.1476 1.0064 20 1 -0.4849 0.8401 -0.0004 21 1 3.2342 0.4705 -1.7165 22 1 6.1600 1.4850 -2.0739 23 1 3.5091 -3.9821 0.5994 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238694779.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:20 Heat of formation + Delta-G solvation = -180.426262 kcal Electronic energy + Delta-G solvation = -16390.732463 eV Core-core repulsion = 12981.524752 eV Total energy + Delta-G solvation = -3409.207711 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.13393 -49.53057 -47.98942 -40.96521 -37.72927 -36.11545 -33.85750 -32.47076 -27.43087 -26.89171 -24.54210 -22.86727 -20.00678 -19.79987 -18.84604 -18.53465 -18.07870 -17.74384 -17.34661 -16.75739 -16.44652 -15.50046 -15.39775 -14.86066 -14.55375 -14.50417 -14.32692 -14.15492 -13.84315 -13.33750 -12.97167 -12.74993 -12.49205 -12.10395 -11.88778 -11.47256 -10.72799 -10.44114 -9.77264 -9.16417 -6.71132 -0.06786 0.30287 1.19887 1.32013 1.41715 1.97292 2.18743 2.54077 2.75399 3.00370 3.13577 3.40538 3.70987 3.92105 3.98843 4.45061 4.66321 4.87258 5.00908 5.18537 5.59819 5.95446 6.07664 6.40248 6.89673 6.95788 7.87662 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.013086 C = 0.009245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.114247 B = 2139.228603 C = 3027.828161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.052 3.948 3 Si 0.943 3.057 4 H -0.238 1.238 5 H -0.261 1.261 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.085 0.915 9 C 0.015 3.985 10 C -0.165 4.165 11 C -0.185 4.185 12 C 0.320 3.680 13 F -0.201 7.201 14 F -0.203 7.203 15 C 0.182 3.818 16 F -0.127 7.127 17 N -0.514 5.514 18 C 0.226 3.774 19 O -0.473 6.473 20 H 0.307 0.693 21 H 0.143 0.857 22 H 0.165 0.835 23 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 4.637 -3.001 7.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.170 4.170 3 Si 0.764 3.236 4 H -0.162 1.162 5 H -0.187 1.187 6 H -0.177 1.177 7 C -0.441 4.441 8 H 0.103 0.897 9 C 0.008 3.992 10 C -0.189 4.189 11 C -0.190 4.190 12 C 0.266 3.734 13 F -0.182 7.182 14 F -0.184 7.184 15 C 0.030 3.970 16 F -0.107 7.107 17 N -0.237 5.237 18 C 0.041 3.959 19 O -0.279 6.279 20 H 0.119 0.881 21 H 0.160 0.840 22 H 0.182 0.818 23 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.779 4.496 -2.273 6.944 hybrid contribution -0.411 0.211 -0.617 0.772 sum 4.368 4.707 -2.890 7.042 Atomic orbital electron populations 1.69664 1.09035 1.32942 1.30479 1.26908 0.95509 1.04233 0.90348 0.85832 0.79970 0.76679 0.81080 1.16203 1.18672 1.17750 1.19418 0.92652 0.96888 1.35112 0.89708 1.18617 0.94099 0.93944 0.92518 1.20916 0.93959 1.03090 1.00942 1.20672 0.95971 0.99259 1.03065 1.20501 0.76164 0.94194 0.82519 1.92995 1.58338 1.85995 1.80860 1.92973 1.63417 1.90941 1.71070 1.16735 0.80144 0.97884 1.02252 1.91499 1.32471 1.96191 1.90541 1.65868 1.17808 1.26912 1.13136 1.18889 0.85302 0.96188 0.95515 1.84713 1.82848 1.27724 1.32661 0.88149 0.83991 0.81849 0.74629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.23 13.93 21.83 0.30 -36.92 14 2 C 0.05 2.37 5.42 85.24 0.46 2.83 14 3 Si 0.94 35.64 24.55 68.60 1.68 37.33 14 4 H -0.24 -8.23 6.45 99.48 0.64 -7.59 14 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 14 6 H -0.25 -10.01 7.03 99.48 0.70 -9.31 14 7 C -0.41 -20.16 9.22 23.38 0.22 -19.94 14 8 H 0.08 4.35 7.88 -2.91 -0.02 4.33 14 9 C 0.02 0.70 5.16 -21.09 -0.11 0.60 14 10 C -0.16 -7.08 6.68 22.64 0.15 -6.93 14 11 C -0.19 -7.49 5.72 -20.00 -0.11 -7.60 14 12 C 0.32 10.35 5.59 71.24 0.40 10.74 14 13 F -0.20 -6.85 15.48 44.97 0.70 -6.16 14 14 F -0.20 -6.79 16.51 44.97 0.74 -6.04 14 15 C 0.18 8.03 8.26 84.82 0.70 8.73 14 16 F -0.13 -5.32 15.41 44.97 0.69 -4.63 14 17 N -0.51 -24.18 10.39 -307.90 -3.20 -27.38 14 18 C 0.23 10.50 7.80 85.45 0.67 11.16 14 19 O -0.47 -19.91 12.90 -86.77 -1.12 -21.03 14 20 H 0.31 12.60 8.30 -92.71 -0.77 11.83 14 21 H 0.14 5.80 4.06 -2.91 -0.01 5.79 14 22 H 0.16 3.85 8.14 -2.39 -0.02 3.83 14 23 H 0.40 12.64 9.06 -74.06 -0.67 11.97 14 Total: -1.00 -55.53 221.06 2.73 -52.81 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.55 Total: 12.43 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 2.37 Total: -0.40 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -2.89 Total: -64.30 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.12 Total: -21.03 kcal Atomic # 9 Polarization: -18.96 SS G_CDS: 2.13 Total: -16.83 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 1.68 Total: 37.33 kcal Total: -55.53 2.73 -52.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238694779.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.618 kcal (2) G-P(sol) polarization free energy of solvation -55.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds